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NIM1K (NIM1 serine/threonine protein kinase)

Identity

Alias_symbol (synonym)MGC42105
NIM1
Other alias
HGNC (Hugo) NIM1K
LocusID (NCBI) 167359
Atlas_Id 43361
Location 5p12  [Link to chromosome band 5p12]
Location_base_pair Starts at 43192068 and ends at 43280850 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NIM1K   28646
Cards
Entrez_Gene (NCBI)NIM1K  167359  NIM1 serine/threonine protein kinase
AliasesNIM1
GeneCards (Weizmann)NIM1K
Ensembl hg19 (Hinxton)ENSG00000177453 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177453 [Gene_View]  chr5:43192068-43280850 [Contig_View]  NIM1K [Vega]
ICGC DataPortalENSG00000177453
TCGA cBioPortalNIM1K
AceView (NCBI)NIM1K
Genatlas (Paris)NIM1K
WikiGenes167359
SOURCE (Princeton)NIM1K
Genetics Home Reference (NIH)NIM1K
Genomic and cartography
GoldenPath hg38 (UCSC)NIM1K  -     chr5:43192068-43280850 +  5p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NIM1K  -     5p12   [Description]    (hg19-Feb_2009)
EnsemblNIM1K - 5p12 [CytoView hg19]  NIM1K - 5p12 [CytoView hg38]
Mapping of homologs : NCBINIM1K [Mapview hg19]  NIM1K [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122985 BC036422 DA778478 DQ891642 DQ894831
RefSeq transcript (Entrez)NM_153361
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NIM1K
Cluster EST : UnigeneHs.25845 [ NCBI ]
CGAP (NCI)Hs.25845
Alternative Splicing GalleryENSG00000177453
Gene ExpressionNIM1K [ NCBI-GEO ]   NIM1K [ EBI - ARRAY_EXPRESS ]   NIM1K [ SEEK ]   NIM1K [ MEM ]
Gene Expression Viewer (FireBrowse)NIM1K [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)167359
GTEX Portal (Tissue expression)NIM1K
Human Protein AtlasENSG00000177453-NIM1K [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY84
Splice isoforms : SwissVarQ8IY84
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
PhosPhoSitePlusQ8IY84
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)NIM1K
DMDM Disease mutations167359
Blocks (Seattle)NIM1K
SuperfamilyQ8IY84
Human Protein Atlas [tissue]ENSG00000177453-NIM1K [tissue]
Peptide AtlasQ8IY84
HPRD14618
IPIIPI00217690   
Protein Interaction databases
DIP (DOE-UCLA)Q8IY84
IntAct (EBI)Q8IY84
FunCoupENSG00000177453
BioGRIDNIM1K
STRING (EMBL)NIM1K
ZODIACNIM1K
Ontologies - Pathways
QuickGOQ8IY84
Ontology : AmiGOmagnesium ion binding  protein serine/threonine kinase activity  ATP binding  nucleus  cytoplasm  protein phosphorylation  intracellular signal transduction  
Ontology : EGO-EBImagnesium ion binding  protein serine/threonine kinase activity  ATP binding  nucleus  cytoplasm  protein phosphorylation  intracellular signal transduction  
NDEx NetworkNIM1K
Atlas of Cancer Signalling NetworkNIM1K
Wikipedia pathwaysNIM1K
Orthology - Evolution
OrthoDB167359
GeneTree (enSembl)ENSG00000177453
Phylogenetic Trees/Animal Genes : TreeFamNIM1K
HOVERGENQ8IY84
HOGENOMQ8IY84
Homologs : HomoloGeneNIM1K
Homology/Alignments : Family Browser (UCSC)NIM1K
Gene fusions - Rearrangements
Fusion: Tumor Portal NIM1K
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIM1K [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NIM1K
dbVarNIM1K
ClinVarNIM1K
1000_GenomesNIM1K 
Exome Variant ServerNIM1K
ExAC (Exome Aggregation Consortium)ENSG00000177453
GNOMAD BrowserENSG00000177453
Genetic variants : HAPMAP167359
Genomic Variants (DGV)NIM1K [DGVbeta]
DECIPHERNIM1K [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNIM1K 
Mutations
ICGC Data PortalNIM1K 
TCGA Data PortalNIM1K 
Broad Tumor PortalNIM1K
OASIS PortalNIM1K [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNIM1K
BioMutasearch NIM1K
DgiDB (Drug Gene Interaction Database)NIM1K
DoCM (Curated mutations)NIM1K (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIM1K (select a term)
intoGenNIM1K
Cancer3DNIM1K(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNIM1K
Genetic Testing Registry NIM1K
NextProtQ8IY84 [Medical]
TSGene167359
GENETestsNIM1K
Target ValidationNIM1K
Huge Navigator NIM1K [HugePedia]
snp3D : Map Gene to Disease167359
BioCentury BCIQNIM1K
ClinGenNIM1K
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD167359
Chemical/Pharm GKB GenePA166123709
Clinical trialNIM1K
Miscellaneous
canSAR (ICR)NIM1K (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIM1K
EVEXNIM1K
GoPubMedNIM1K
iHOPNIM1K
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:02:40 CET 2017

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