Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NINJ1 (ninjurin 1)

Identity

Alias (NCBI)NIN1
NINJURIN
HGNC (Hugo) NINJ1
HGNC Alias symbNIN1
HGNC Alias namenerve injury-induced protein-1
LocusID (NCBI) 4814
Atlas_Id 45700
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 93121496 and ends at 93134251 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NINJ1 (9q22.31) / LOC100499227 ()NINJ1 (9q22.31) / NINJ1 (9q22.31)NINJ1 (9q22.31) / TET2 (4q24)
NINJ1 (9q22.31) / TRMT61A (14q32.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NINJ1   7824
Cards
Entrez_Gene (NCBI)NINJ1    ninjurin 1
AliasesNIN1; NINJURIN
GeneCards (Weizmann)NINJ1
Ensembl hg19 (Hinxton)ENSG00000131669 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131669 [Gene_View]  ENSG00000131669 [Sequence]  chr9:93121496-93134251 [Contig_View]  NINJ1 [Vega]
ICGC DataPortalENSG00000131669
TCGA cBioPortalNINJ1
AceView (NCBI)NINJ1
Genatlas (Paris)NINJ1
SOURCE (Princeton)NINJ1
Genetics Home Reference (NIH)NINJ1
Genomic and cartography
GoldenPath hg38 (UCSC)NINJ1  -     chr9:93121496-93134251 -  9q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NINJ1  -     9q22.31   [Description]    (hg19-Feb_2009)
GoldenPathNINJ1 - 9q22.31 [CytoView hg19]  NINJ1 - 9q22.31 [CytoView hg38]
ImmunoBaseENSG00000131669
Genome Data Viewer NCBININJ1 [Mapview hg19]  
OMIM602062   
Gene and transcription
Genbank (Entrez)AK094530 BC000298 BC004440 BC019336 BC048212
RefSeq transcript (Entrez)NM_004148
Consensus coding sequences : CCDS (NCBI)NINJ1
Gene ExpressionNINJ1 [ NCBI-GEO ]   NINJ1 [ EBI - ARRAY_EXPRESS ]   NINJ1 [ SEEK ]   NINJ1 [ MEM ]
Gene Expression Viewer (FireBrowse)NINJ1 [ Firebrowse - Broad ]
GenevisibleExpression of NINJ1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4814
GTEX Portal (Tissue expression)NINJ1
Human Protein AtlasENSG00000131669-NINJ1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92982   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92982  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92982
PhosPhoSitePlusQ92982
Domains : Interpro (EBI)Ninjurin    Ninjurin1   
Domain families : Pfam (Sanger)Ninjurin (PF04923)   
Domain families : Pfam (NCBI)pfam04923   
Conserved Domain (NCBI)NINJ1
SuperfamilyQ92982
AlphaFold pdb e-kbQ92982   
Human Protein Atlas [tissue]ENSG00000131669-NINJ1 [tissue]
HPRD03639
Protein Interaction databases
DIP (DOE-UCLA)Q92982
IntAct (EBI)Q92982
BioGRIDNINJ1
STRING (EMBL)NINJ1
ZODIACNINJ1
Ontologies - Pathways
QuickGOQ92982
Ontology : AmiGOlipopolysaccharide binding  leukocyte chemotaxis involved in inflammatory response  protein binding  cell adhesion  cell adhesion  nervous system development  programmed cell death  integral component of membrane  cytolysis  heterotypic cell-cell adhesion  positive regulation of toll-like receptor 4 signaling pathway  tissue regeneration  muscle cell differentiation  positive regulation of angiogenesis  positive regulation of inflammatory response  protein homooligomerization  necrotic cell death  cell adhesion mediator activity  
Ontology : EGO-EBIlipopolysaccharide binding  leukocyte chemotaxis involved in inflammatory response  protein binding  cell adhesion  cell adhesion  nervous system development  programmed cell death  integral component of membrane  cytolysis  heterotypic cell-cell adhesion  positive regulation of toll-like receptor 4 signaling pathway  tissue regeneration  muscle cell differentiation  positive regulation of angiogenesis  positive regulation of inflammatory response  protein homooligomerization  necrotic cell death  cell adhesion mediator activity  
NDEx NetworkNINJ1
Atlas of Cancer Signalling NetworkNINJ1
Wikipedia pathwaysNINJ1
Orthology - Evolution
OrthoDB4814
GeneTree (enSembl)ENSG00000131669
Phylogenetic Trees/Animal Genes : TreeFamNINJ1
Homologs : HomoloGeneNINJ1
Homology/Alignments : Family Browser (UCSC)NINJ1
Gene fusions - Rearrangements
Fusion : QuiverNINJ1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNINJ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NINJ1
dbVarNINJ1
ClinVarNINJ1
MonarchNINJ1
1000_GenomesNINJ1 
Exome Variant ServerNINJ1
GNOMAD BrowserENSG00000131669
Varsome BrowserNINJ1
ACMGNINJ1 variants
VarityQ92982
Genomic Variants (DGV)NINJ1 [DGVbeta]
DECIPHERNINJ1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNINJ1 
Mutations
ICGC Data PortalNINJ1 
TCGA Data PortalNINJ1 
Broad Tumor PortalNINJ1
OASIS PortalNINJ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNINJ1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNINJ1
Mutations and Diseases : HGMDNINJ1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNINJ1
DgiDB (Drug Gene Interaction Database)NINJ1
DoCM (Curated mutations)NINJ1
CIViC (Clinical Interpretations of Variants in Cancer)NINJ1
Cancer3DNINJ1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602062   
Orphanet
DisGeNETNINJ1
MedgenNINJ1
Genetic Testing Registry NINJ1
NextProtQ92982 [Medical]
GENETestsNINJ1
Target ValidationNINJ1
Huge Navigator NINJ1 [HugePedia]
ClinGenNINJ1
Clinical trials, drugs, therapy
MyCancerGenomeNINJ1
Protein Interactions : CTDNINJ1
Pharm GKB GenePA31631
PharosQ92982
Clinical trialNINJ1
Miscellaneous
canSAR (ICR)NINJ1
HarmonizomeNINJ1
DataMed IndexNINJ1
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNINJ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:22:46 CEST 2021

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