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NINJ1 (ninjurin 1)

Identity

Alias_symbol (synonym)NIN1
Other aliasNINJURIN
HGNC (Hugo) NINJ1
LocusID (NCBI) 4814
Atlas_Id 45700
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 93121489 and ends at 93134288 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NINJ1 (9q22.31) / LOC100499227 ()NINJ1 (9q22.31) / NINJ1 (9q22.31)NINJ1 (9q22.31) / TET2 (4q24)
NINJ1 (9q22.31) / TRMT61A (14q32.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NINJ1   7824
Cards
Entrez_Gene (NCBI)NINJ1  4814  ninjurin 1
AliasesNIN1; NINJURIN
GeneCards (Weizmann)NINJ1
Ensembl hg19 (Hinxton)ENSG00000131669 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131669 [Gene_View]  chr9:93121489-93134288 [Contig_View]  NINJ1 [Vega]
ICGC DataPortalENSG00000131669
TCGA cBioPortalNINJ1
AceView (NCBI)NINJ1
Genatlas (Paris)NINJ1
WikiGenes4814
SOURCE (Princeton)NINJ1
Genetics Home Reference (NIH)NINJ1
Genomic and cartography
GoldenPath hg38 (UCSC)NINJ1  -     chr9:93121489-93134288 -  9q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NINJ1  -     9q22.31   [Description]    (hg19-Feb_2009)
EnsemblNINJ1 - 9q22.31 [CytoView hg19]  NINJ1 - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBININJ1 [Mapview hg19]  NINJ1 [Mapview hg38]
OMIM602062   
Gene and transcription
Genbank (Entrez)AK094530 BC000298 BC004440 BC019336 BC048212
RefSeq transcript (Entrez)NM_004148
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NINJ1
Cluster EST : UnigeneHs.494457 [ NCBI ]
CGAP (NCI)Hs.494457
Alternative Splicing GalleryENSG00000131669
Gene ExpressionNINJ1 [ NCBI-GEO ]   NINJ1 [ EBI - ARRAY_EXPRESS ]   NINJ1 [ SEEK ]   NINJ1 [ MEM ]
Gene Expression Viewer (FireBrowse)NINJ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4814
GTEX Portal (Tissue expression)NINJ1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92982   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92982  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92982
Splice isoforms : SwissVarQ92982
PhosPhoSitePlusQ92982
Domains : Interpro (EBI)Ninjurin    Ninjurin1   
Domain families : Pfam (Sanger)Ninjurin (PF04923)   
Domain families : Pfam (NCBI)pfam04923   
Conserved Domain (NCBI)NINJ1
DMDM Disease mutations4814
Blocks (Seattle)NINJ1
SuperfamilyQ92982
Human Protein AtlasENSG00000131669
Peptide AtlasQ92982
HPRD03639
IPIIPI00295172   
Protein Interaction databases
DIP (DOE-UCLA)Q92982
IntAct (EBI)Q92982
FunCoupENSG00000131669
BioGRIDNINJ1
STRING (EMBL)NINJ1
ZODIACNINJ1
Ontologies - Pathways
QuickGOQ92982
Ontology : AmiGOpositive regulation of cell-matrix adhesion  protein binding  cell adhesion  nervous system development  integral component of membrane  tissue regeneration  hyaloid vascular plexus regression  
Ontology : EGO-EBIpositive regulation of cell-matrix adhesion  protein binding  cell adhesion  nervous system development  integral component of membrane  tissue regeneration  hyaloid vascular plexus regression  
NDEx NetworkNINJ1
Atlas of Cancer Signalling NetworkNINJ1
Wikipedia pathwaysNINJ1
Orthology - Evolution
OrthoDB4814
GeneTree (enSembl)ENSG00000131669
Phylogenetic Trees/Animal Genes : TreeFamNINJ1
HOVERGENQ92982
HOGENOMQ92982
Homologs : HomoloGeneNINJ1
Homology/Alignments : Family Browser (UCSC)NINJ1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNINJ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NINJ1
dbVarNINJ1
ClinVarNINJ1
1000_GenomesNINJ1 
Exome Variant ServerNINJ1
ExAC (Exome Aggregation Consortium)NINJ1 (select the gene name)
Genetic variants : HAPMAP4814
Genomic Variants (DGV)NINJ1 [DGVbeta]
DECIPHERNINJ1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNINJ1 
Mutations
ICGC Data PortalNINJ1 
TCGA Data PortalNINJ1 
Broad Tumor PortalNINJ1
OASIS PortalNINJ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNINJ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNINJ1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NINJ1
DgiDB (Drug Gene Interaction Database)NINJ1
DoCM (Curated mutations)NINJ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NINJ1 (select a term)
intoGenNINJ1
Cancer3DNINJ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602062   
Orphanet
MedgenNINJ1
Genetic Testing Registry NINJ1
NextProtQ92982 [Medical]
TSGene4814
GENETestsNINJ1
Target ValidationNINJ1
Huge Navigator NINJ1 [HugePedia]
snp3D : Map Gene to Disease4814
BioCentury BCIQNINJ1
ClinGenNINJ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4814
Chemical/Pharm GKB GenePA31631
Clinical trialNINJ1
Miscellaneous
canSAR (ICR)NINJ1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNINJ1
EVEXNINJ1
GoPubMedNINJ1
iHOPNINJ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:22:10 CEST 2017

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