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NINJ2 (ninjurin 2)

Identity

Other alias-
HGNC (Hugo) NINJ2
LocusID (NCBI) 4815
Atlas_Id 70835
Location 12p13.33  [Link to chromosome band 12p13]
Location_base_pair Starts at 564296 and ends at 610413 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADIPOR2 (12p13.33) / NINJ2 (12p13.33)CHSY3 (5q23.3) / NINJ2 (12p13.33)KDM5A (12p13.33) / NINJ2 (12p13.33)
LRP6 (12p13.2) / NINJ2 (12p13.33)PAH (12q23.2) / NINJ2 (12p13.33)WNT5B (12p13.33) / NINJ2 (12p13.33)
KDM5A NINJ2PAH NINJ2LRP6 NINJ2
WNT5B NINJ2CHSY3 NINJ2ADIPOR2 NINJ2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NINJ2   7825
Cards
Entrez_Gene (NCBI)NINJ2  4815  ninjurin 2
Aliases
GeneCards (Weizmann)NINJ2
Ensembl hg19 (Hinxton)ENSG00000171840 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171840 [Gene_View]  chr12:564296-610413 [Contig_View]  NINJ2 [Vega]
ICGC DataPortalENSG00000171840
TCGA cBioPortalNINJ2
AceView (NCBI)NINJ2
Genatlas (Paris)NINJ2
WikiGenes4815
SOURCE (Princeton)NINJ2
Genetics Home Reference (NIH)NINJ2
Genomic and cartography
GoldenPath hg38 (UCSC)NINJ2  -     chr12:564296-610413 -  12p13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NINJ2  -     12p13.33   [Description]    (hg19-Feb_2009)
EnsemblNINJ2 - 12p13.33 [CytoView hg19]  NINJ2 - 12p13.33 [CytoView hg38]
Mapping of homologs : NCBININJ2 [Mapview hg19]  NINJ2 [Mapview hg38]
OMIM607297   
Gene and transcription
Genbank (Entrez)AF205633 AK296012 AK298043 AK315995 BC057766
RefSeq transcript (Entrez)NM_001294345 NM_001294346 NM_016533
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NINJ2
Cluster EST : UnigeneHs.656450 [ NCBI ]
CGAP (NCI)Hs.656450
Alternative Splicing GalleryENSG00000171840
Gene ExpressionNINJ2 [ NCBI-GEO ]   NINJ2 [ EBI - ARRAY_EXPRESS ]   NINJ2 [ SEEK ]   NINJ2 [ MEM ]
Gene Expression Viewer (FireBrowse)NINJ2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4815
GTEX Portal (Tissue expression)NINJ2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZG7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZG7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZG7
Splice isoforms : SwissVarQ9NZG7
PhosPhoSitePlusQ9NZG7
Domains : Interpro (EBI)Ninjurin   
Domain families : Pfam (Sanger)Ninjurin (PF04923)   
Domain families : Pfam (NCBI)pfam04923   
Conserved Domain (NCBI)NINJ2
DMDM Disease mutations4815
Blocks (Seattle)NINJ2
SuperfamilyQ9NZG7
Human Protein AtlasENSG00000171840
Peptide AtlasQ9NZG7
HPRD09530
IPIIPI00908783   IPI00798409   IPI01012920   IPI01012452   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZG7
IntAct (EBI)Q9NZG7
FunCoupENSG00000171840
BioGRIDNINJ2
STRING (EMBL)NINJ2
ZODIACNINJ2
Ontologies - Pathways
QuickGOQ9NZG7
Ontology : AmiGOprotein binding  integral component of plasma membrane  neuron cell-cell adhesion  nervous system development  tissue regeneration  
Ontology : EGO-EBIprotein binding  integral component of plasma membrane  neuron cell-cell adhesion  nervous system development  tissue regeneration  
NDEx NetworkNINJ2
Atlas of Cancer Signalling NetworkNINJ2
Wikipedia pathwaysNINJ2
Orthology - Evolution
OrthoDB4815
GeneTree (enSembl)ENSG00000171840
Phylogenetic Trees/Animal Genes : TreeFamNINJ2
HOVERGENQ9NZG7
HOGENOMQ9NZG7
Homologs : HomoloGeneNINJ2
Homology/Alignments : Family Browser (UCSC)NINJ2
Gene fusions - Rearrangements
Fusion: TCGAKDM5A NINJ2
Fusion: TCGAPAH NINJ2
Fusion: TCGALRP6 NINJ2
Fusion: TCGAWNT5B NINJ2
Fusion: TCGACHSY3 NINJ2
Fusion: TCGAADIPOR2 NINJ2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNINJ2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NINJ2
dbVarNINJ2
ClinVarNINJ2
1000_GenomesNINJ2 
Exome Variant ServerNINJ2
ExAC (Exome Aggregation Consortium)NINJ2 (select the gene name)
Genetic variants : HAPMAP4815
Genomic Variants (DGV)NINJ2 [DGVbeta]
DECIPHERNINJ2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNINJ2 
Mutations
ICGC Data PortalNINJ2 
TCGA Data PortalNINJ2 
Broad Tumor PortalNINJ2
OASIS PortalNINJ2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNINJ2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNINJ2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NINJ2
DgiDB (Drug Gene Interaction Database)NINJ2
DoCM (Curated mutations)NINJ2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NINJ2 (select a term)
intoGenNINJ2
Cancer3DNINJ2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607297   
Orphanet
MedgenNINJ2
Genetic Testing Registry NINJ2
NextProtQ9NZG7 [Medical]
TSGene4815
GENETestsNINJ2
Huge Navigator NINJ2 [HugePedia]
snp3D : Map Gene to Disease4815
BioCentury BCIQNINJ2
ClinGenNINJ2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4815
Chemical/Pharm GKB GenePA31632
Clinical trialNINJ2
Miscellaneous
canSAR (ICR)NINJ2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNINJ2
EVEXNINJ2
GoPubMedNINJ2
iHOPNINJ2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:44:59 CEST 2017

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