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NIP7 (NIP7, nucleolar pre-rRNA processing protein)

Identity

Alias_namesnuclear import 7 homolog (S. cerevisiae)
Alias_symbol (synonym)CGI-37
FLJ10296
HSPC031
KD93
Other alias
HGNC (Hugo) NIP7
LocusID (NCBI) 51388
Atlas_Id 70836
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 69339512 and ends at 69343110 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NIP7 (16q22.1) / SLU7 (5q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NIP7   24328
Cards
Entrez_Gene (NCBI)NIP7  51388  NIP7, nucleolar pre-rRNA processing protein
AliasesCGI-37; HSPC031; KD93
GeneCards (Weizmann)NIP7
Ensembl hg19 (Hinxton)ENSG00000132603 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132603 [Gene_View]  chr16:69339512-69343110 [Contig_View]  NIP7 [Vega]
ICGC DataPortalENSG00000132603
TCGA cBioPortalNIP7
AceView (NCBI)NIP7
Genatlas (Paris)NIP7
WikiGenes51388
SOURCE (Princeton)NIP7
Genetics Home Reference (NIH)NIP7
Genomic and cartography
GoldenPath hg38 (UCSC)NIP7  -     chr16:69339512-69343110 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NIP7  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblNIP7 - 16q22.1 [CytoView hg19]  NIP7 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBINIP7 [Mapview hg19]  NIP7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB062398 AB062479 AB112439 AF085360 AF132971
RefSeq transcript (Entrez)NM_001199434 NM_016101
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NIP7
Cluster EST : UnigeneHs.585728 [ NCBI ]
CGAP (NCI)Hs.585728
Alternative Splicing GalleryENSG00000132603
Gene ExpressionNIP7 [ NCBI-GEO ]   NIP7 [ EBI - ARRAY_EXPRESS ]   NIP7 [ SEEK ]   NIP7 [ MEM ]
Gene Expression Viewer (FireBrowse)NIP7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51388
GTEX Portal (Tissue expression)NIP7
Human Protein AtlasENSG00000132603-NIP7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y221   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y221  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y221
Splice isoforms : SwissVarQ9Y221
PhosPhoSitePlusQ9Y221
Domaine pattern : Prosite (Expaxy)PUA (PS50890)   
Domains : Interpro (EBI)PUA    PUA-like_domain    Rbsml_synth_fac_NIP7-like    Ribosomal_synth_fac_NIP7   
Domain families : Pfam (Sanger)UPF0113 (PF03657)   
Domain families : Pfam (NCBI)pfam03657   
Domain families : Smart (EMBL)PUA (SM00359)  
Conserved Domain (NCBI)NIP7
DMDM Disease mutations51388
Blocks (Seattle)NIP7
PDB (SRS)1SQW    1T5Y   
PDB (PDBSum)1SQW    1T5Y   
PDB (IMB)1SQW    1T5Y   
PDB (RSDB)1SQW    1T5Y   
Structural Biology KnowledgeBase1SQW    1T5Y   
SCOP (Structural Classification of Proteins)1SQW    1T5Y   
CATH (Classification of proteins structures)1SQW    1T5Y   
SuperfamilyQ9Y221
Human Protein Atlas [tissue]ENSG00000132603-NIP7 [tissue]
Peptide AtlasQ9Y221
HPRD16709
IPIIPI00007175   IPI00020793   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y221
IntAct (EBI)Q9Y221
FunCoupENSG00000132603
BioGRIDNIP7
STRING (EMBL)NIP7
ZODIACNIP7
Ontologies - Pathways
QuickGOQ9Y221
Ontology : AmiGORNA binding  protein binding  nucleus  nucleolus  nucleolus  cytosol  preribosome, large subunit precursor  ribosome assembly  ribosomal large subunit biogenesis  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleolus  nucleolus  cytosol  preribosome, large subunit precursor  ribosome assembly  ribosomal large subunit biogenesis  
NDEx NetworkNIP7
Atlas of Cancer Signalling NetworkNIP7
Wikipedia pathwaysNIP7
Orthology - Evolution
OrthoDB51388
GeneTree (enSembl)ENSG00000132603
Phylogenetic Trees/Animal Genes : TreeFamNIP7
HOVERGENQ9Y221
HOGENOMQ9Y221
Homologs : HomoloGeneNIP7
Homology/Alignments : Family Browser (UCSC)NIP7
Gene fusions - Rearrangements
Tumor Fusion PortalNIP7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIP7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NIP7
dbVarNIP7
ClinVarNIP7
1000_GenomesNIP7 
Exome Variant ServerNIP7
ExAC (Exome Aggregation Consortium)ENSG00000132603
GNOMAD BrowserENSG00000132603
Genetic variants : HAPMAP51388
Genomic Variants (DGV)NIP7 [DGVbeta]
DECIPHERNIP7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNIP7 
Mutations
ICGC Data PortalNIP7 
TCGA Data PortalNIP7 
Broad Tumor PortalNIP7
OASIS PortalNIP7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNIP7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNIP7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NIP7
DgiDB (Drug Gene Interaction Database)NIP7
DoCM (Curated mutations)NIP7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIP7 (select a term)
intoGenNIP7
Cancer3DNIP7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNIP7
MedgenNIP7
Genetic Testing Registry NIP7
NextProtQ9Y221 [Medical]
TSGene51388
GENETestsNIP7
Target ValidationNIP7
Huge Navigator NIP7 [HugePedia]
snp3D : Map Gene to Disease51388
BioCentury BCIQNIP7
ClinGenNIP7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51388
Chemical/Pharm GKB GenePA142671264
Clinical trialNIP7
Miscellaneous
canSAR (ICR)NIP7 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIP7
EVEXNIP7
GoPubMedNIP7
iHOPNIP7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:00 CET 2017

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