Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NIPA2 (non imprinted in Prader-Willi/Angelman syndrome 2)

Identity

Other alias-
HGNC (Hugo) NIPA2
LocusID (NCBI) 81614
Atlas_Id 46305
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 22838641 and ends at 22868384 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NIPA2   17044
Cards
Entrez_Gene (NCBI)NIPA2  81614  non imprinted in Prader-Willi/Angelman syndrome 2
Aliases
GeneCards (Weizmann)NIPA2
Ensembl hg19 (Hinxton)ENSG00000140157 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140157 [Gene_View]  chr15:22838641-22868384 [Contig_View]  NIPA2 [Vega]
ICGC DataPortalENSG00000140157
TCGA cBioPortalNIPA2
AceView (NCBI)NIPA2
Genatlas (Paris)NIPA2
WikiGenes81614
SOURCE (Princeton)NIPA2
Genetics Home Reference (NIH)NIPA2
Genomic and cartography
GoldenPath hg38 (UCSC)NIPA2  -     chr15:22838641-22868384 +  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NIPA2  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblNIPA2 - 15q11.2 [CytoView hg19]  NIPA2 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBINIPA2 [Mapview hg19]  NIPA2 [Mapview hg38]
OMIM608146   
Gene and transcription
Genbank (Entrez)AK096305 AK300843 AK313584 AY732242 BC000957
RefSeq transcript (Entrez)NM_001008860 NM_001008892 NM_001008894 NM_001184888 NM_001184889 NM_030922
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NIPA2
Cluster EST : UnigeneHs.591003 [ NCBI ]
CGAP (NCI)Hs.591003
Alternative Splicing GalleryENSG00000140157
Gene ExpressionNIPA2 [ NCBI-GEO ]   NIPA2 [ EBI - ARRAY_EXPRESS ]   NIPA2 [ SEEK ]   NIPA2 [ MEM ]
Gene Expression Viewer (FireBrowse)NIPA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81614
GTEX Portal (Tissue expression)NIPA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8Q9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8Q9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8Q9
Splice isoforms : SwissVarQ8N8Q9
PhosPhoSitePlusQ8N8Q9
Domains : Interpro (EBI)Mg_trans_NIPA   
Domain families : Pfam (Sanger)Mg_trans_NIPA (PF05653)   
Domain families : Pfam (NCBI)pfam05653   
Conserved Domain (NCBI)NIPA2
DMDM Disease mutations81614
Blocks (Seattle)NIPA2
SuperfamilyQ8N8Q9
Human Protein AtlasENSG00000140157
Peptide AtlasQ8N8Q9
HPRD16290
IPIIPI00329480   IPI00549279   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8Q9
IntAct (EBI)Q8N8Q9
FunCoupENSG00000140157
BioGRIDNIPA2
STRING (EMBL)NIPA2
ZODIACNIPA2
Ontologies - Pathways
QuickGOQ8N8Q9
Ontology : AmiGOearly endosome  plasma membrane  magnesium ion transmembrane transporter activity  magnesium ion transport  membrane  integral component of membrane  magnesium ion transmembrane transport  
Ontology : EGO-EBIearly endosome  plasma membrane  magnesium ion transmembrane transporter activity  magnesium ion transport  membrane  integral component of membrane  magnesium ion transmembrane transport  
NDEx NetworkNIPA2
Atlas of Cancer Signalling NetworkNIPA2
Wikipedia pathwaysNIPA2
Orthology - Evolution
OrthoDB81614
GeneTree (enSembl)ENSG00000140157
Phylogenetic Trees/Animal Genes : TreeFamNIPA2
HOVERGENQ8N8Q9
HOGENOMQ8N8Q9
Homologs : HomoloGeneNIPA2
Homology/Alignments : Family Browser (UCSC)NIPA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIPA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NIPA2
dbVarNIPA2
ClinVarNIPA2
1000_GenomesNIPA2 
Exome Variant ServerNIPA2
ExAC (Exome Aggregation Consortium)NIPA2 (select the gene name)
Genetic variants : HAPMAP81614
Genomic Variants (DGV)NIPA2 [DGVbeta]
DECIPHERNIPA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNIPA2 
Mutations
ICGC Data PortalNIPA2 
TCGA Data PortalNIPA2 
Broad Tumor PortalNIPA2
OASIS PortalNIPA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNIPA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNIPA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NIPA2
DgiDB (Drug Gene Interaction Database)NIPA2
DoCM (Curated mutations)NIPA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIPA2 (select a term)
intoGenNIPA2
Cancer3DNIPA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608146   
Orphanet
MedgenNIPA2
Genetic Testing Registry NIPA2
NextProtQ8N8Q9 [Medical]
TSGene81614
GENETestsNIPA2
Huge Navigator NIPA2 [HugePedia]
snp3D : Map Gene to Disease81614
BioCentury BCIQNIPA2
ClinGenNIPA2 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81614
Chemical/Pharm GKB GenePA134911294
Clinical trialNIPA2
Miscellaneous
canSAR (ICR)NIPA2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIPA2
EVEXNIPA2
GoPubMedNIPA2
iHOPNIPA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:28:41 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.