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NIPAL1 (NIPA-like domain containing 1)

Identity

Alias_namesNPAL1
Alias_symbol (synonym)DKFZp686A06115
Other alias
HGNC (Hugo) NIPAL1
LocusID (NCBI) 152519
Atlas_Id 70838
Location 4p12  [Link to chromosome band 4p12]
Location_base_pair Starts at 48018791 and ends at 48039080 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FBN2 (5q23.3) / NIPAL1 (4p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NIPAL1   27194
Cards
Entrez_Gene (NCBI)NIPAL1  152519  NIPA-like domain containing 1
AliasesNPAL1
GeneCards (Weizmann)NIPAL1
Ensembl hg19 (Hinxton) [Gene_View]  chr4:48018791-48039080 [Contig_View]  NIPAL1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:48018791-48039080 [Contig_View]  NIPAL1 [Vega]
TCGA cBioPortalNIPAL1
AceView (NCBI)NIPAL1
Genatlas (Paris)NIPAL1
WikiGenes152519
SOURCE (Princeton)NIPAL1
Genetics Home Reference (NIH)NIPAL1
Genomic and cartography
GoldenPath hg19 (UCSC)NIPAL1  -     chr4:48018791-48039080 +  4p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NIPAL1  -     4p12   [Description]    (hg38-Dec_2013)
EnsemblNIPAL1 - 4p12 [CytoView hg19]  NIPAL1 - 4p12 [CytoView hg38]
Mapping of homologs : NCBINIPAL1 [Mapview hg19]  NIPAL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023734 AK095299 AL832997 BC067881 CR749484
RefSeq transcript (Entrez)NM_207330
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)NIPAL1
Cluster EST : UnigeneHs.134190 [ NCBI ]
CGAP (NCI)Hs.134190
Gene ExpressionNIPAL1 [ NCBI-GEO ]   NIPAL1 [ EBI - ARRAY_EXPRESS ]   NIPAL1 [ SEEK ]   NIPAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)NIPAL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152519
GTEX Portal (Tissue expression)NIPAL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NVV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NVV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NVV3
Splice isoforms : SwissVarQ6NVV3
PhosPhoSitePlusQ6NVV3
Domains : Interpro (EBI)Mg_trans_NIPA   
Domain families : Pfam (Sanger)Mg_trans_NIPA (PF05653)   
Domain families : Pfam (NCBI)pfam05653   
Conserved Domain (NCBI)NIPAL1
DMDM Disease mutations152519
Blocks (Seattle)NIPAL1
SuperfamilyQ6NVV3
Peptide AtlasQ6NVV3
HPRD14096
IPIIPI00470875   IPI00965963   IPI00966218   
Protein Interaction databases
DIP (DOE-UCLA)Q6NVV3
IntAct (EBI)Q6NVV3
BioGRIDNIPAL1
STRING (EMBL)NIPAL1
ZODIACNIPAL1
Ontologies - Pathways
QuickGOQ6NVV3
Ontology : AmiGOmagnesium ion transmembrane transporter activity  magnesium ion transport  integral component of membrane  
Ontology : EGO-EBImagnesium ion transmembrane transporter activity  magnesium ion transport  integral component of membrane  
NDEx NetworkNIPAL1
Atlas of Cancer Signalling NetworkNIPAL1
Wikipedia pathwaysNIPAL1
Orthology - Evolution
OrthoDB152519
Phylogenetic Trees/Animal Genes : TreeFamNIPAL1
HOVERGENQ6NVV3
HOGENOMQ6NVV3
Homologs : HomoloGeneNIPAL1
Homology/Alignments : Family Browser (UCSC)NIPAL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIPAL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NIPAL1
dbVarNIPAL1
ClinVarNIPAL1
1000_GenomesNIPAL1 
Exome Variant ServerNIPAL1
ExAC (Exome Aggregation Consortium)NIPAL1 (select the gene name)
Genetic variants : HAPMAP152519
Genomic Variants (DGV)NIPAL1 [DGVbeta]
DECIPHER (Syndromes)4:48018791-48039080  
CONAN: Copy Number AnalysisNIPAL1 
Mutations
ICGC Data PortalNIPAL1 
TCGA Data PortalNIPAL1 
Broad Tumor PortalNIPAL1
OASIS PortalNIPAL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNIPAL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNIPAL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NIPAL1
DgiDB (Drug Gene Interaction Database)NIPAL1
DoCM (Curated mutations)NIPAL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIPAL1 (select a term)
intoGenNIPAL1
Cancer3DNIPAL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNIPAL1
Genetic Testing Registry NIPAL1
NextProtQ6NVV3 [Medical]
TSGene152519
GENETestsNIPAL1
Huge Navigator NIPAL1 [HugePedia]
snp3D : Map Gene to Disease152519
BioCentury BCIQNIPAL1
ClinGenNIPAL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152519
Chemical/Pharm GKB GenePA164723925
Clinical trialNIPAL1
Miscellaneous
canSAR (ICR)NIPAL1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIPAL1
EVEXNIPAL1
GoPubMedNIPAL1
iHOPNIPAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:56 CET 2017

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