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NIPAL2 (NIPA like domain containing 2)

Identity

Alias_namesNPAL2
Alias_symbol (synonym)FLJ13955
Other alias
HGNC (Hugo) NIPAL2
LocusID (NCBI) 79815
Atlas_Id 70839
Location 8q22.2  [Link to chromosome band 8q22]
Location_base_pair Starts at 98189826 and ends at 98294393 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BOP1 (8q24.3) / NIPAL2 (8q22.2)NIPAL2 (8q22.2) / NIPAL2 (8q22.2)NIPAL2 (8q22.2) / RNF19A (8q22.2)
STK3 (8q22.2) / NIPAL2 (8q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NIPAL2   25854
Cards
Entrez_Gene (NCBI)NIPAL2  79815  NIPA like domain containing 2
AliasesNPAL2
GeneCards (Weizmann)NIPAL2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:98189826-98294393 [Contig_View]  NIPAL2 [Vega]
TCGA cBioPortalNIPAL2
AceView (NCBI)NIPAL2
Genatlas (Paris)NIPAL2
WikiGenes79815
SOURCE (Princeton)NIPAL2
Genetics Home Reference (NIH)NIPAL2
Genomic and cartography
GoldenPath hg38 (UCSC)NIPAL2  -     chr8:98189826-98294393 -  8q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NIPAL2  -     8q22.2   [Description]    (hg19-Feb_2009)
EnsemblNIPAL2 - 8q22.2 [CytoView hg19]  NIPAL2 - 8q22.2 [CytoView hg38]
Mapping of homologs : NCBINIPAL2 [Mapview hg19]  NIPAL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI753381 AK024017 AK025015 AK302414 AL706246
RefSeq transcript (Entrez)NM_001321635 NM_001321636 NM_024759
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NIPAL2
Cluster EST : UnigeneHs.732714 [ NCBI ]
CGAP (NCI)Hs.732714
Gene ExpressionNIPAL2 [ NCBI-GEO ]   NIPAL2 [ EBI - ARRAY_EXPRESS ]   NIPAL2 [ SEEK ]   NIPAL2 [ MEM ]
Gene Expression Viewer (FireBrowse)NIPAL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79815
GTEX Portal (Tissue expression)NIPAL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H841   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H841  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H841
Splice isoforms : SwissVarQ9H841
PhosPhoSitePlusQ9H841
Domains : Interpro (EBI)Mg_trans_NIPA   
Domain families : Pfam (Sanger)Mg_trans_NIPA (PF05653)   
Domain families : Pfam (NCBI)pfam05653   
Conserved Domain (NCBI)NIPAL2
DMDM Disease mutations79815
Blocks (Seattle)NIPAL2
SuperfamilyQ9H841
Peptide AtlasQ9H841
HPRD08591
IPIIPI00414756   IPI00829918   
Protein Interaction databases
DIP (DOE-UCLA)Q9H841
IntAct (EBI)Q9H841
BioGRIDNIPAL2
STRING (EMBL)NIPAL2
ZODIACNIPAL2
Ontologies - Pathways
QuickGOQ9H841
Ontology : AmiGOmagnesium ion transmembrane transporter activity  magnesium ion transport  membrane  integral component of membrane  magnesium ion transmembrane transport  
Ontology : EGO-EBImagnesium ion transmembrane transporter activity  magnesium ion transport  membrane  integral component of membrane  magnesium ion transmembrane transport  
NDEx NetworkNIPAL2
Atlas of Cancer Signalling NetworkNIPAL2
Wikipedia pathwaysNIPAL2
Orthology - Evolution
OrthoDB79815
Phylogenetic Trees/Animal Genes : TreeFamNIPAL2
HOVERGENQ9H841
HOGENOMQ9H841
Homologs : HomoloGeneNIPAL2
Homology/Alignments : Family Browser (UCSC)NIPAL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIPAL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NIPAL2
dbVarNIPAL2
ClinVarNIPAL2
1000_GenomesNIPAL2 
Exome Variant ServerNIPAL2
ExAC (Exome Aggregation Consortium)NIPAL2 (select the gene name)
Genetic variants : HAPMAP79815
Genomic Variants (DGV)NIPAL2 [DGVbeta]
DECIPHERNIPAL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNIPAL2 
Mutations
ICGC Data PortalNIPAL2 
TCGA Data PortalNIPAL2 
Broad Tumor PortalNIPAL2
OASIS PortalNIPAL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNIPAL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNIPAL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NIPAL2
DgiDB (Drug Gene Interaction Database)NIPAL2
DoCM (Curated mutations)NIPAL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIPAL2 (select a term)
intoGenNIPAL2
Cancer3DNIPAL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNIPAL2
Genetic Testing Registry NIPAL2
NextProtQ9H841 [Medical]
TSGene79815
GENETestsNIPAL2
Target ValidationNIPAL2
Huge Navigator NIPAL2 [HugePedia]
snp3D : Map Gene to Disease79815
BioCentury BCIQNIPAL2
ClinGenNIPAL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79815
Chemical/Pharm GKB GenePA164723926
Clinical trialNIPAL2
Miscellaneous
canSAR (ICR)NIPAL2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIPAL2
EVEXNIPAL2
GoPubMedNIPAL2
iHOPNIPAL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:40 CEST 2017

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