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NIPAL3 (NIPA like domain containing 3)

Identity

Alias_namesNPAL3
Alias_symbol (synonym)DJ462O23.2
Other alias
HGNC (Hugo) NIPAL3
LocusID (NCBI) 57185
Atlas_Id 70840
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 24413487 and ends at 24472983 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNP (17q21.2) / NIPAL3 (1p36.11)MYO1B (2q32.3) / NIPAL3 (1p36.11)NIPAL3 (1p36.11) / B4GALT5 (20q13.13)
RPS12 (6q23.2) / NIPAL3 (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NIPAL3   25233
Cards
Entrez_Gene (NCBI)NIPAL3  57185  NIPA like domain containing 3
AliasesDJ462O23.2; NPAL3
GeneCards (Weizmann)NIPAL3
Ensembl hg19 (Hinxton)ENSG00000001461 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000001461 [Gene_View]  chr1:24413487-24472983 [Contig_View]  NIPAL3 [Vega]
ICGC DataPortalENSG00000001461
TCGA cBioPortalNIPAL3
AceView (NCBI)NIPAL3
Genatlas (Paris)NIPAL3
WikiGenes57185
SOURCE (Princeton)NIPAL3
Genetics Home Reference (NIH)NIPAL3
Genomic and cartography
GoldenPath hg38 (UCSC)NIPAL3  -     chr1:24413487-24472983 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NIPAL3  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblNIPAL3 - 1p36.11 [CytoView hg19]  NIPAL3 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBINIPAL3 [Mapview hg19]  NIPAL3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF131814 AK312433 BC001265 BC012492 BC063583
RefSeq transcript (Entrez)NM_001322854 NM_001322855 NM_001322856 NM_001322857 NM_001322858 NM_001322859 NM_001322860 NM_001322861 NM_001322862 NM_001322863 NM_001322864 NM_001322865 NM_001322866 NM_001322868 NM_001330409 NM_020448
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NIPAL3
Cluster EST : UnigeneHs.523442 [ NCBI ]
CGAP (NCI)Hs.523442
Alternative Splicing GalleryENSG00000001461
Gene ExpressionNIPAL3 [ NCBI-GEO ]   NIPAL3 [ EBI - ARRAY_EXPRESS ]   NIPAL3 [ SEEK ]   NIPAL3 [ MEM ]
Gene Expression Viewer (FireBrowse)NIPAL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57185
GTEX Portal (Tissue expression)NIPAL3
Human Protein AtlasENSG00000001461-NIPAL3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P499   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P499  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P499
Splice isoforms : SwissVarQ6P499
PhosPhoSitePlusQ6P499
Domains : Interpro (EBI)Mg_trans_NIPA   
Domain families : Pfam (Sanger)Mg_trans_NIPA (PF05653)   
Domain families : Pfam (NCBI)pfam05653   
Conserved Domain (NCBI)NIPAL3
DMDM Disease mutations57185
Blocks (Seattle)NIPAL3
SuperfamilyQ6P499
Human Protein Atlas [tissue]ENSG00000001461-NIPAL3 [tissue]
Peptide AtlasQ6P499
HPRD13149
IPIIPI00783575   IPI00761050   IPI00411353   IPI00816418   IPI00746927   IPI00384941   
Protein Interaction databases
DIP (DOE-UCLA)Q6P499
IntAct (EBI)Q6P499
FunCoupENSG00000001461
BioGRIDNIPAL3
STRING (EMBL)NIPAL3
ZODIACNIPAL3
Ontologies - Pathways
QuickGOQ6P499
Ontology : AmiGOimmunoglobulin production  protein binding  magnesium ion transmembrane transporter activity  magnesium ion transport  membrane  integral component of membrane  magnesium ion transmembrane transport  
Ontology : EGO-EBIimmunoglobulin production  protein binding  magnesium ion transmembrane transporter activity  magnesium ion transport  membrane  integral component of membrane  magnesium ion transmembrane transport  
NDEx NetworkNIPAL3
Atlas of Cancer Signalling NetworkNIPAL3
Wikipedia pathwaysNIPAL3
Orthology - Evolution
OrthoDB57185
GeneTree (enSembl)ENSG00000001461
Phylogenetic Trees/Animal Genes : TreeFamNIPAL3
HOVERGENQ6P499
HOGENOMQ6P499
Homologs : HomoloGeneNIPAL3
Homology/Alignments : Family Browser (UCSC)NIPAL3
Gene fusions - Rearrangements
Fusion: Tumor Portal NIPAL3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIPAL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NIPAL3
dbVarNIPAL3
ClinVarNIPAL3
1000_GenomesNIPAL3 
Exome Variant ServerNIPAL3
ExAC (Exome Aggregation Consortium)ENSG00000001461
GNOMAD BrowserENSG00000001461
Genetic variants : HAPMAP57185
Genomic Variants (DGV)NIPAL3 [DGVbeta]
DECIPHERNIPAL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNIPAL3 
Mutations
ICGC Data PortalNIPAL3 
TCGA Data PortalNIPAL3 
Broad Tumor PortalNIPAL3
OASIS PortalNIPAL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNIPAL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNIPAL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NIPAL3
DgiDB (Drug Gene Interaction Database)NIPAL3
DoCM (Curated mutations)NIPAL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIPAL3 (select a term)
intoGenNIPAL3
Cancer3DNIPAL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNIPAL3
Genetic Testing Registry NIPAL3
NextProtQ6P499 [Medical]
TSGene57185
GENETestsNIPAL3
Target ValidationNIPAL3
Huge Navigator NIPAL3 [HugePedia]
snp3D : Map Gene to Disease57185
BioCentury BCIQNIPAL3
ClinGenNIPAL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57185
Chemical/Pharm GKB GenePA164723927
Clinical trialNIPAL3
Miscellaneous
canSAR (ICR)NIPAL3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIPAL3
EVEXNIPAL3
GoPubMedNIPAL3
iHOPNIPAL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:18:59 CET 2017

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