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NIPAL4 (NIPA-like domain containing 4)

Identity

Alias_namesNIPA-like 4
Alias_symbol (synonym)ICHYN
Other aliasARCI6
ICHTHYIN
HGNC (Hugo) NIPAL4
LocusID (NCBI) 348938
Atlas_Id 70841
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 156887027 and ends at 156901730 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PRDM6 (5q23.2) / NIPAL4 (5q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NIPAL4   28018
Cards
Entrez_Gene (NCBI)NIPAL4  348938  NIPA-like domain containing 4
AliasesARCI6; ICHTHYIN; ICHYN
GeneCards (Weizmann)NIPAL4
Ensembl hg19 (Hinxton)ENSG00000172548 [Gene_View]  chr5:156887027-156901730 [Contig_View]  NIPAL4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172548 [Gene_View]  chr5:156887027-156901730 [Contig_View]  NIPAL4 [Vega]
ICGC DataPortalENSG00000172548
TCGA cBioPortalNIPAL4
AceView (NCBI)NIPAL4
Genatlas (Paris)NIPAL4
WikiGenes348938
SOURCE (Princeton)NIPAL4
Genetics Home Reference (NIH)NIPAL4
Genomic and cartography
GoldenPath hg19 (UCSC)NIPAL4  -     chr5:156887027-156901730 +  5q33.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NIPAL4  -     5q33.3   [Description]    (hg38-Dec_2013)
EnsemblNIPAL4 - 5q33.3 [CytoView hg19]  NIPAL4 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBINIPAL4 [Mapview hg19]  NIPAL4 [Mapview hg38]
OMIM609383   612281   
Gene and transcription
Genbank (Entrez)AF131815 AK026158 AK296972 AK308830 AK309242
RefSeq transcript (Entrez)NM_001099287 NM_001172292
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_016626 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)NIPAL4
Cluster EST : UnigeneHs.4285 [ NCBI ]
CGAP (NCI)Hs.4285
Alternative Splicing GalleryENSG00000172548
Gene ExpressionNIPAL4 [ NCBI-GEO ]   NIPAL4 [ EBI - ARRAY_EXPRESS ]   NIPAL4 [ SEEK ]   NIPAL4 [ MEM ]
Gene Expression Viewer (FireBrowse)NIPAL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348938
GTEX Portal (Tissue expression)NIPAL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0D2K0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0D2K0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0D2K0
Splice isoforms : SwissVarQ0D2K0
PhosPhoSitePlusQ0D2K0
Domains : Interpro (EBI)Mg_trans_NIPA   
Domain families : Pfam (Sanger)Mg_trans_NIPA (PF05653)   
Domain families : Pfam (NCBI)pfam05653   
Conserved Domain (NCBI)NIPAL4
DMDM Disease mutations348938
Blocks (Seattle)NIPAL4
SuperfamilyQ0D2K0
Human Protein AtlasENSG00000172548
Peptide AtlasQ0D2K0
IPIIPI00398054   IPI00917516   IPI00976297   
Protein Interaction databases
DIP (DOE-UCLA)Q0D2K0
IntAct (EBI)Q0D2K0
FunCoupENSG00000172548
BioGRIDNIPAL4
STRING (EMBL)NIPAL4
ZODIACNIPAL4
Ontologies - Pathways
QuickGOQ0D2K0
Ontology : AmiGOmagnesium ion transmembrane transporter activity  magnesium ion transport  integral component of membrane  
Ontology : EGO-EBImagnesium ion transmembrane transporter activity  magnesium ion transport  integral component of membrane  
NDEx NetworkNIPAL4
Atlas of Cancer Signalling NetworkNIPAL4
Wikipedia pathwaysNIPAL4
Orthology - Evolution
OrthoDB348938
GeneTree (enSembl)ENSG00000172548
Phylogenetic Trees/Animal Genes : TreeFamNIPAL4
HOVERGENQ0D2K0
HOGENOMQ0D2K0
Homologs : HomoloGeneNIPAL4
Homology/Alignments : Family Browser (UCSC)NIPAL4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIPAL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NIPAL4
dbVarNIPAL4
ClinVarNIPAL4
1000_GenomesNIPAL4 
Exome Variant ServerNIPAL4
ExAC (Exome Aggregation Consortium)NIPAL4 (select the gene name)
Genetic variants : HAPMAP348938
Genomic Variants (DGV)NIPAL4 [DGVbeta]
DECIPHER (Syndromes)5:156887027-156901730  ENSG00000172548
CONAN: Copy Number AnalysisNIPAL4 
Mutations
ICGC Data PortalNIPAL4 
TCGA Data PortalNIPAL4 
Broad Tumor PortalNIPAL4
OASIS PortalNIPAL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNIPAL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNIPAL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NIPAL4
DgiDB (Drug Gene Interaction Database)NIPAL4
DoCM (Curated mutations)NIPAL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIPAL4 (select a term)
intoGenNIPAL4
Cancer3DNIPAL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609383    612281   
Orphanet265    11420   
MedgenNIPAL4
Genetic Testing Registry NIPAL4
NextProtQ0D2K0 [Medical]
TSGene348938
GENETestsNIPAL4
Huge Navigator NIPAL4 [HugePedia]
snp3D : Map Gene to Disease348938
BioCentury BCIQNIPAL4
ClinGenNIPAL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348938
Chemical/Pharm GKB GenePA164723956
Clinical trialNIPAL4
Miscellaneous
canSAR (ICR)NIPAL4 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIPAL4
EVEXNIPAL4
GoPubMedNIPAL4
iHOPNIPAL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:57 CET 2017

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