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NIPSNAP1 (nipsnap homolog 1)

Identity

Alias (NCBI)-
HGNC (Hugo) NIPSNAP1
HGNC Alias name4-nitrophenylphosphatase domain and non-neuronal SNAP25-like 1
HGNC Previous nameNIPSNAP, C. elegans, homolog 1
 nipsnap homolog 1 (C. elegans)
LocusID (NCBI) 8508
Atlas_Id 55212
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 29554809 and ends at 29581113 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NIPSNAP1 (22q12.2) / COL1A1 (17q21.33)NIPSNAP1 (22q12.2) / DOCK7 (1p31.3)NIPSNAP1 (22q12.2) / NIPSNAP1 (22q12.2)
OSBP2 (22q12.2) / NIPSNAP1 (22q12.2)THOC5 (22q12.2) / NIPSNAP1 (22q12.2)THOC5 22q12.2 / NIPSNAP1 22q12.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  THOC5/NIPSNAP1 (22q12)

External links

Nomenclature
HGNC (Hugo)NIPSNAP1   7827
Cards
Entrez_Gene (NCBI)NIPSNAP1    nipsnap homolog 1
Aliases
GeneCards (Weizmann)NIPSNAP1
Ensembl hg19 (Hinxton)ENSG00000184117 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184117 [Gene_View]  ENSG00000184117 [Sequence]  chr22:29554809-29581113 [Contig_View]  NIPSNAP1 [Vega]
ICGC DataPortalENSG00000184117
TCGA cBioPortalNIPSNAP1
AceView (NCBI)NIPSNAP1
Genatlas (Paris)NIPSNAP1
SOURCE (Princeton)NIPSNAP1
Genetics Home Reference (NIH)NIPSNAP1
Genomic and cartography
GoldenPath hg38 (UCSC)NIPSNAP1  -     chr22:29554809-29581113 -  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NIPSNAP1  -     22q12.2   [Description]    (hg19-Feb_2009)
GoldenPathNIPSNAP1 - 22q12.2 [CytoView hg19]  NIPSNAP1 - 22q12.2 [CytoView hg38]
ImmunoBaseENSG00000184117
genome Data Viewer NCBINIPSNAP1 [Mapview hg19]  
OMIM603249   
Gene and transcription
Genbank (Entrez)AJ001258 AK098367 AK290953 AK298816 AK314407
RefSeq transcript (Entrez)NM_001202502 NM_003634
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NIPSNAP1
Alternative Splicing GalleryENSG00000184117
Gene ExpressionNIPSNAP1 [ NCBI-GEO ]   NIPSNAP1 [ EBI - ARRAY_EXPRESS ]   NIPSNAP1 [ SEEK ]   NIPSNAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)NIPSNAP1 [ Firebrowse - Broad ]
GenevisibleExpression of NIPSNAP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8508
GTEX Portal (Tissue expression)NIPSNAP1
Human Protein AtlasENSG00000184117-NIPSNAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BPW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BPW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BPW8
Splice isoforms : SwissVarQ9BPW8
PhosPhoSitePlusQ9BPW8
Domains : Interpro (EBI)Dimeric_a/b-barrel    NIPSNAP   
Domain families : Pfam (Sanger)NIPSNAP (PF07978)   
Domain families : Pfam (NCBI)pfam07978   
Conserved Domain (NCBI)NIPSNAP1
Blocks (Seattle)NIPSNAP1
SuperfamilyQ9BPW8
Human Protein Atlas [tissue]ENSG00000184117-NIPSNAP1 [tissue]
Peptide AtlasQ9BPW8
HPRD10342
IPIIPI00304435   IPI00894205   IPI00893815   IPI00894014   
Protein Interaction databases
DIP (DOE-UCLA)Q9BPW8
IntAct (EBI)Q9BPW8
BioGRIDNIPSNAP1
STRING (EMBL)NIPSNAP1
ZODIACNIPSNAP1
Ontologies - Pathways
QuickGOQ9BPW8
Ontology : AmiGOprotein binding  mitochondrion  mitochondrion  sensory perception of pain  neurotransmitter binding  synaptic membrane  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrion  sensory perception of pain  neurotransmitter binding  synaptic membrane  
NDEx NetworkNIPSNAP1
Atlas of Cancer Signalling NetworkNIPSNAP1
Wikipedia pathwaysNIPSNAP1
Orthology - Evolution
OrthoDB8508
GeneTree (enSembl)ENSG00000184117
Phylogenetic Trees/Animal Genes : TreeFamNIPSNAP1
HOGENOMQ9BPW8
Homologs : HomoloGeneNIPSNAP1
Homology/Alignments : Family Browser (UCSC)NIPSNAP1
Gene fusions - Rearrangements
Fusion : MitelmanTHOC5/NIPSNAP1 [22q12.2/22q12.2]  
Fusion PortalTHOC5 22q12.2 NIPSNAP1 22q12.2 OV
Fusion : QuiverNIPSNAP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIPSNAP1 [hg38]
dbVarNIPSNAP1
ClinVarNIPSNAP1
MonarchNIPSNAP1
1000_GenomesNIPSNAP1 
Exome Variant ServerNIPSNAP1
GNOMAD BrowserENSG00000184117
Varsome BrowserNIPSNAP1
Genomic Variants (DGV)NIPSNAP1 [DGVbeta]
DECIPHERNIPSNAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNIPSNAP1 
Mutations
ICGC Data PortalNIPSNAP1 
TCGA Data PortalNIPSNAP1 
Broad Tumor PortalNIPSNAP1
OASIS PortalNIPSNAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNIPSNAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNIPSNAP1
Mutations and Diseases : HGMDNIPSNAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NIPSNAP1
DgiDB (Drug Gene Interaction Database)NIPSNAP1
DoCM (Curated mutations)NIPSNAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIPSNAP1 (select a term)
intoGenNIPSNAP1
Cancer3DNIPSNAP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603249   
Orphanet
DisGeNETNIPSNAP1
MedgenNIPSNAP1
Genetic Testing Registry NIPSNAP1
NextProtQ9BPW8 [Medical]
GENETestsNIPSNAP1
Target ValidationNIPSNAP1
Huge Navigator NIPSNAP1 [HugePedia]
ClinGenNIPSNAP1
Clinical trials, drugs, therapy
MyCancerGenomeNIPSNAP1
Protein Interactions : CTD
Pharm GKB GenePA31634
PharosQ9BPW8
Clinical trialNIPSNAP1
Miscellaneous
canSAR (ICR)NIPSNAP1 (select the gene name)
HarmonizomeNIPSNAP1
DataMed IndexNIPSNAP1
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNIPSNAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:28:56 CET 2021
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