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NIPSNAP2 (nipsnap homolog 2)

Identity

Alias_namesGBAS
glioblastoma amplified sequence
Other alias
HGNC (Hugo) NIPSNAP2
LocusID (NCBI) 2631
Atlas_Id 79767
Location 7p11.2  [Link to chromosome band 7p11]
Location_base_pair Starts at 55964577 and ends at 56000182 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NIPSNAP2   4179
Cards
Entrez_Gene (NCBI)NIPSNAP2  2631  nipsnap homolog 2
AliasesGBAS
GeneCards (Weizmann)NIPSNAP2
Ensembl hg19 (Hinxton)ENSG00000146729 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146729 [Gene_View]  chr7:55964577-56000182 [Contig_View]  NIPSNAP2 [Vega]
ICGC DataPortalENSG00000146729
TCGA cBioPortalNIPSNAP2
AceView (NCBI)NIPSNAP2
Genatlas (Paris)NIPSNAP2
WikiGenes2631
SOURCE (Princeton)NIPSNAP2
Genetics Home Reference (NIH)NIPSNAP2
Genomic and cartography
GoldenPath hg38 (UCSC)NIPSNAP2  -     chr7:55964577-56000182 +  7p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NIPSNAP2  -     7p11.2   [Description]    (hg19-Feb_2009)
EnsemblNIPSNAP2 - 7p11.2 [CytoView hg19]  NIPSNAP2 - 7p11.2 [CytoView hg38]
Mapping of homologs : NCBINIPSNAP2 [Mapview hg19]  NIPSNAP2 [Mapview hg38]
OMIM603004   
Gene and transcription
Genbank (Entrez)AF029786 AJ001259 AK097049 AK125036 AK315648
RefSeq transcript (Entrez)NM_001202469 NM_001483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NIPSNAP2
Cluster EST : UnigeneHs.591069 [ NCBI ]
CGAP (NCI)Hs.591069
Alternative Splicing GalleryENSG00000146729
Gene ExpressionNIPSNAP2 [ NCBI-GEO ]   NIPSNAP2 [ EBI - ARRAY_EXPRESS ]   NIPSNAP2 [ SEEK ]   NIPSNAP2 [ MEM ]
Gene Expression Viewer (FireBrowse)NIPSNAP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2631
GTEX Portal (Tissue expression)NIPSNAP2
Human Protein AtlasENSG00000146729-NIPSNAP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75323   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75323  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75323
Splice isoforms : SwissVarO75323
PhosPhoSitePlusO75323
Domains : Interpro (EBI)Dimeric_a/b-barrel    NIPSNAP   
Domain families : Pfam (Sanger)NIPSNAP (PF07978)   
Domain families : Pfam (NCBI)pfam07978   
Conserved Domain (NCBI)NIPSNAP2
DMDM Disease mutations2631
Blocks (Seattle)NIPSNAP2
SuperfamilyO75323
Human Protein Atlas [tissue]ENSG00000146729-NIPSNAP2 [tissue]
Peptide AtlasO75323
IPIIPI00016077   IPI00925757   IPI00925073   IPI00926675   IPI00926887   IPI00926531   
Protein Interaction databases
DIP (DOE-UCLA)O75323
IntAct (EBI)O75323
FunCoupENSG00000146729
BioGRIDNIPSNAP2
STRING (EMBL)NIPSNAP2
ZODIACNIPSNAP2
Ontologies - Pathways
QuickGOO75323
Ontology : AmiGOprotein binding  mitochondrion  mitochondrion  integral component of plasma membrane  oxidative phosphorylation  ATP biosynthetic process  membrane  positive regulation of high voltage-gated calcium channel activity  negative regulation of ATP citrate synthase activity  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrion  integral component of plasma membrane  oxidative phosphorylation  ATP biosynthetic process  membrane  positive regulation of high voltage-gated calcium channel activity  negative regulation of ATP citrate synthase activity  
NDEx NetworkNIPSNAP2
Atlas of Cancer Signalling NetworkNIPSNAP2
Wikipedia pathwaysNIPSNAP2
Orthology - Evolution
OrthoDB2631
GeneTree (enSembl)ENSG00000146729
Phylogenetic Trees/Animal Genes : TreeFamNIPSNAP2
HOVERGENO75323
HOGENOMO75323
Homologs : HomoloGeneNIPSNAP2
Homology/Alignments : Family Browser (UCSC)NIPSNAP2
Gene fusions - Rearrangements
Tumor Fusion PortalNIPSNAP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIPSNAP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NIPSNAP2
dbVarNIPSNAP2
ClinVarNIPSNAP2
1000_GenomesNIPSNAP2 
Exome Variant ServerNIPSNAP2
ExAC (Exome Aggregation Consortium)ENSG00000146729
GNOMAD BrowserENSG00000146729
Genetic variants : HAPMAP2631
Genomic Variants (DGV)NIPSNAP2 [DGVbeta]
DECIPHERNIPSNAP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNIPSNAP2 
Mutations
ICGC Data PortalNIPSNAP2 
TCGA Data PortalNIPSNAP2 
Broad Tumor PortalNIPSNAP2
OASIS PortalNIPSNAP2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNIPSNAP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NIPSNAP2
DgiDB (Drug Gene Interaction Database)NIPSNAP2
DoCM (Curated mutations)NIPSNAP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIPSNAP2 (select a term)
intoGenNIPSNAP2
Cancer3DNIPSNAP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603004   
Orphanet
DisGeNETNIPSNAP2
MedgenNIPSNAP2
Genetic Testing Registry NIPSNAP2
NextProtO75323 [Medical]
TSGene2631
GENETestsNIPSNAP2
Target ValidationNIPSNAP2
Huge Navigator NIPSNAP2 [HugePedia]
snp3D : Map Gene to Disease2631
BioCentury BCIQNIPSNAP2
ClinGenNIPSNAP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2631
Chemical/Pharm GKB GenePA28593
Clinical trialNIPSNAP2
Miscellaneous
canSAR (ICR)NIPSNAP2 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIPSNAP2
EVEXNIPSNAP2
GoPubMedNIPSNAP2
iHOPNIPSNAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:16:49 CET 2017

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