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NIPSNAP3A (nipsnap homolog 3A)

Identity

Alias_namesnipsnap homolog 3A (C. elegans)
Alias_symbol (synonym)DKFZp564D177
FLJ13953
HSPC299
MGC14553
Other aliasNIPSNAP4
TASSC
HGNC (Hugo) NIPSNAP3A
LocusID (NCBI) 25934
Atlas_Id 70844
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 104747568 and ends at 104760124 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NIPSNAP3A (9q31.1) / TMEFF1 (9q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NIPSNAP3A   23619
Cards
Entrez_Gene (NCBI)NIPSNAP3A  25934  nipsnap homolog 3A
AliasesHSPC299; NIPSNAP4; TASSC
GeneCards (Weizmann)NIPSNAP3A
Ensembl hg19 (Hinxton)ENSG00000136783 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136783 [Gene_View]  chr9:104747568-104760124 [Contig_View]  NIPSNAP3A [Vega]
ICGC DataPortalENSG00000136783
TCGA cBioPortalNIPSNAP3A
AceView (NCBI)NIPSNAP3A
Genatlas (Paris)NIPSNAP3A
WikiGenes25934
SOURCE (Princeton)NIPSNAP3A
Genetics Home Reference (NIH)NIPSNAP3A
Genomic and cartography
GoldenPath hg38 (UCSC)NIPSNAP3A  -     chr9:104747568-104760124 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NIPSNAP3A  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblNIPSNAP3A - 9q31.1 [CytoView hg19]  NIPSNAP3A - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBINIPSNAP3A [Mapview hg19]  NIPSNAP3A [Mapview hg38]
OMIM608871   
Gene and transcription
Genbank (Entrez)AF161417 AK024015 AK301410 AL117557 BC005935
RefSeq transcript (Entrez)NM_001329570 NM_015469
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NIPSNAP3A
Cluster EST : UnigeneHs.530275 [ NCBI ]
CGAP (NCI)Hs.530275
Alternative Splicing GalleryENSG00000136783
Gene ExpressionNIPSNAP3A [ NCBI-GEO ]   NIPSNAP3A [ EBI - ARRAY_EXPRESS ]   NIPSNAP3A [ SEEK ]   NIPSNAP3A [ MEM ]
Gene Expression Viewer (FireBrowse)NIPSNAP3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25934
GTEX Portal (Tissue expression)NIPSNAP3A
Human Protein AtlasENSG00000136783-NIPSNAP3A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UFN0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UFN0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UFN0
Splice isoforms : SwissVarQ9UFN0
PhosPhoSitePlusQ9UFN0
Domains : Interpro (EBI)Dimeric_a/b-barrel    NIPSNAP   
Domain families : Pfam (Sanger)NIPSNAP (PF07978)   
Domain families : Pfam (NCBI)pfam07978   
Conserved Domain (NCBI)NIPSNAP3A
DMDM Disease mutations25934
Blocks (Seattle)NIPSNAP3A
SuperfamilyQ9UFN0
Human Protein Atlas [tissue]ENSG00000136783-NIPSNAP3A [tissue]
Peptide AtlasQ9UFN0
HPRD16399
IPIIPI00004845   
Protein Interaction databases
DIP (DOE-UCLA)Q9UFN0
IntAct (EBI)Q9UFN0
FunCoupENSG00000136783
BioGRIDNIPSNAP3A
STRING (EMBL)NIPSNAP3A
ZODIACNIPSNAP3A
Ontologies - Pathways
QuickGOQ9UFN0
Ontology : AmiGOprotein binding  nucleus  mitochondrion  cytosol  
Ontology : EGO-EBIprotein binding  nucleus  mitochondrion  cytosol  
NDEx NetworkNIPSNAP3A
Atlas of Cancer Signalling NetworkNIPSNAP3A
Wikipedia pathwaysNIPSNAP3A
Orthology - Evolution
OrthoDB25934
GeneTree (enSembl)ENSG00000136783
Phylogenetic Trees/Animal Genes : TreeFamNIPSNAP3A
HOVERGENQ9UFN0
HOGENOMQ9UFN0
Homologs : HomoloGeneNIPSNAP3A
Homology/Alignments : Family Browser (UCSC)NIPSNAP3A
Gene fusions - Rearrangements
Tumor Fusion PortalNIPSNAP3A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIPSNAP3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NIPSNAP3A
dbVarNIPSNAP3A
ClinVarNIPSNAP3A
1000_GenomesNIPSNAP3A 
Exome Variant ServerNIPSNAP3A
ExAC (Exome Aggregation Consortium)ENSG00000136783
GNOMAD BrowserENSG00000136783
Genetic variants : HAPMAP25934
Genomic Variants (DGV)NIPSNAP3A [DGVbeta]
DECIPHERNIPSNAP3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNIPSNAP3A 
Mutations
ICGC Data PortalNIPSNAP3A 
TCGA Data PortalNIPSNAP3A 
Broad Tumor PortalNIPSNAP3A
OASIS PortalNIPSNAP3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNIPSNAP3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNIPSNAP3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NIPSNAP3A
DgiDB (Drug Gene Interaction Database)NIPSNAP3A
DoCM (Curated mutations)NIPSNAP3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIPSNAP3A (select a term)
intoGenNIPSNAP3A
Cancer3DNIPSNAP3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608871   
Orphanet
DisGeNETNIPSNAP3A
MedgenNIPSNAP3A
Genetic Testing Registry NIPSNAP3A
NextProtQ9UFN0 [Medical]
TSGene25934
GENETestsNIPSNAP3A
Target ValidationNIPSNAP3A
Huge Navigator NIPSNAP3A [HugePedia]
snp3D : Map Gene to Disease25934
BioCentury BCIQNIPSNAP3A
ClinGenNIPSNAP3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25934
Chemical/Pharm GKB GenePA134954501
Clinical trialNIPSNAP3A
Miscellaneous
canSAR (ICR)NIPSNAP3A (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIPSNAP3A
EVEXNIPSNAP3A
GoPubMedNIPSNAP3A
iHOPNIPSNAP3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:20:21 CET 2017

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