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NIPSNAP3B (nipsnap homolog 3B)

Identity

Alias_namesnipsnap homolog 3B (C. elegans)
Alias_symbol (synonym)FLJ11275
Other aliasFP944
NIPSNAP3
SNAP1
HGNC (Hugo) NIPSNAP3B
LocusID (NCBI) 55335
Atlas_Id 70845
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 104763741 and ends at 104777764 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RABGAP1 (9q33.2) / NIPSNAP3B (9q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NIPSNAP3B   23641
Cards
Entrez_Gene (NCBI)NIPSNAP3B  55335  nipsnap homolog 3B
AliasesFP944; NIPSNAP3; SNAP1
GeneCards (Weizmann)NIPSNAP3B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:104763741-104777764 [Contig_View]  NIPSNAP3B [Vega]
TCGA cBioPortalNIPSNAP3B
AceView (NCBI)NIPSNAP3B
Genatlas (Paris)NIPSNAP3B
WikiGenes55335
SOURCE (Princeton)NIPSNAP3B
Genetics Home Reference (NIH)NIPSNAP3B
Genomic and cartography
GoldenPath hg38 (UCSC)NIPSNAP3B  -     chr9:104763741-104777764 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NIPSNAP3B  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblNIPSNAP3B - 9q31.1 [CytoView hg19]  NIPSNAP3B - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBINIPSNAP3B [Mapview hg19]  NIPSNAP3B [Mapview hg38]
OMIM608872   
Gene and transcription
Genbank (Entrez)AF370389 AK002137 AK090505 AK091667 AK310397
RefSeq transcript (Entrez)NM_018376
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NIPSNAP3B
Cluster EST : UnigeneHs.732606 [ NCBI ]
CGAP (NCI)Hs.732606
Gene ExpressionNIPSNAP3B [ NCBI-GEO ]   NIPSNAP3B [ EBI - ARRAY_EXPRESS ]   NIPSNAP3B [ SEEK ]   NIPSNAP3B [ MEM ]
Gene Expression Viewer (FireBrowse)NIPSNAP3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55335
GTEX Portal (Tissue expression)NIPSNAP3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BS92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BS92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BS92
Splice isoforms : SwissVarQ9BS92
PhosPhoSitePlusQ9BS92
Domains : Interpro (EBI)Dimeric_a/b-barrel    NIPSNAP   
Domain families : Pfam (Sanger)NIPSNAP (PF07978)   
Domain families : Pfam (NCBI)pfam07978   
Conserved Domain (NCBI)NIPSNAP3B
DMDM Disease mutations55335
Blocks (Seattle)NIPSNAP3B
SuperfamilyQ9BS92
Peptide AtlasQ9BS92
HPRD16400
IPIIPI00020035   IPI00981458   
Protein Interaction databases
DIP (DOE-UCLA)Q9BS92
IntAct (EBI)Q9BS92
BioGRIDNIPSNAP3B
STRING (EMBL)NIPSNAP3B
ZODIACNIPSNAP3B
Ontologies - Pathways
QuickGOQ9BS92
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkNIPSNAP3B
Atlas of Cancer Signalling NetworkNIPSNAP3B
Wikipedia pathwaysNIPSNAP3B
Orthology - Evolution
OrthoDB55335
Phylogenetic Trees/Animal Genes : TreeFamNIPSNAP3B
HOVERGENQ9BS92
HOGENOMQ9BS92
Homologs : HomoloGeneNIPSNAP3B
Homology/Alignments : Family Browser (UCSC)NIPSNAP3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNIPSNAP3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NIPSNAP3B
dbVarNIPSNAP3B
ClinVarNIPSNAP3B
1000_GenomesNIPSNAP3B 
Exome Variant ServerNIPSNAP3B
ExAC (Exome Aggregation Consortium)NIPSNAP3B (select the gene name)
Genetic variants : HAPMAP55335
Genomic Variants (DGV)NIPSNAP3B [DGVbeta]
DECIPHERNIPSNAP3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNIPSNAP3B 
Mutations
ICGC Data PortalNIPSNAP3B 
TCGA Data PortalNIPSNAP3B 
Broad Tumor PortalNIPSNAP3B
OASIS PortalNIPSNAP3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNIPSNAP3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNIPSNAP3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NIPSNAP3B
DgiDB (Drug Gene Interaction Database)NIPSNAP3B
DoCM (Curated mutations)NIPSNAP3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NIPSNAP3B (select a term)
intoGenNIPSNAP3B
Cancer3DNIPSNAP3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608872   
Orphanet
MedgenNIPSNAP3B
Genetic Testing Registry NIPSNAP3B
NextProtQ9BS92 [Medical]
TSGene55335
GENETestsNIPSNAP3B
Target ValidationNIPSNAP3B
Huge Navigator NIPSNAP3B [HugePedia]
snp3D : Map Gene to Disease55335
BioCentury BCIQNIPSNAP3B
ClinGenNIPSNAP3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55335
Chemical/Pharm GKB GenePA134947095
Clinical trialNIPSNAP3B
Miscellaneous
canSAR (ICR)NIPSNAP3B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNIPSNAP3B
EVEXNIPSNAP3B
GoPubMedNIPSNAP3B
iHOPNIPSNAP3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:41 CEST 2017

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