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NKAIN1 (Na+/K+ transporting ATPase interacting 1)

Identity

Alias_namesFAM77C
family with sequence similarity 77
Alias_symbol (synonym)FLJ12650
Other alias
HGNC (Hugo) NKAIN1
LocusID (NCBI) 79570
Atlas_Id 54503
Location 1p35.2  [Link to chromosome band 1p35]
Location_base_pair Starts at 31652592 and ends at 31712734 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NKAIN1 (1p35.2) / EMILIN2 (18p11.32)NKAIN1 (1p35.2) / PFAS (17p13.1)PUM1 (1p35.2) / NKAIN1 (1p35.2)
NKAIN1 1p35.2 / PFAS 17p13.1PUM1 1p35.2 / NKAIN1 1p35.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NKAIN1   25743
Cards
Entrez_Gene (NCBI)NKAIN1  79570  Na+/K+ transporting ATPase interacting 1
AliasesFAM77C
GeneCards (Weizmann)NKAIN1
Ensembl hg19 (Hinxton)ENSG00000084628 [Gene_View]  chr1:31652592-31712734 [Contig_View]  NKAIN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000084628 [Gene_View]  chr1:31652592-31712734 [Contig_View]  NKAIN1 [Vega]
ICGC DataPortalENSG00000084628
TCGA cBioPortalNKAIN1
AceView (NCBI)NKAIN1
Genatlas (Paris)NKAIN1
WikiGenes79570
SOURCE (Princeton)NKAIN1
Genetics Home Reference (NIH)NKAIN1
Genomic and cartography
GoldenPath hg19 (UCSC)NKAIN1  -     chr1:31652592-31712734 -  1p35.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NKAIN1  -     1p35.2   [Description]    (hg38-Dec_2013)
EnsemblNKAIN1 - 1p35.2 [CytoView hg19]  NKAIN1 - 1p35.2 [CytoView hg38]
Mapping of homologs : NCBINKAIN1 [Mapview hg19]  NKAIN1 [Mapview hg38]
OMIM612871   
Gene and transcription
Genbank (Entrez)AI884789 AK022712 AK298874 AK299507 AL832547
RefSeq transcript (Entrez)NM_024522
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)NKAIN1
Cluster EST : UnigeneHs.470259 [ NCBI ]
CGAP (NCI)Hs.470259
Alternative Splicing GalleryENSG00000084628
Gene ExpressionNKAIN1 [ NCBI-GEO ]   NKAIN1 [ EBI - ARRAY_EXPRESS ]   NKAIN1 [ SEEK ]   NKAIN1 [ MEM ]
Gene Expression Viewer (FireBrowse)NKAIN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79570
GTEX Portal (Tissue expression)NKAIN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4KMZ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4KMZ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4KMZ8
Splice isoforms : SwissVarQ4KMZ8
PhosPhoSitePlusQ4KMZ8
Domains : Interpro (EBI)Na/K-Atpase_Interacting   
Domain families : Pfam (Sanger)NKAIN (PF05640)   
Domain families : Pfam (NCBI)pfam05640   
Conserved Domain (NCBI)NKAIN1
DMDM Disease mutations79570
Blocks (Seattle)NKAIN1
SuperfamilyQ4KMZ8
Human Protein AtlasENSG00000084628
Peptide AtlasQ4KMZ8
HPRD07786
IPIIPI00816438   IPI00922416   IPI01020879   
Protein Interaction databases
DIP (DOE-UCLA)Q4KMZ8
IntAct (EBI)Q4KMZ8
FunCoupENSG00000084628
BioGRIDNKAIN1
STRING (EMBL)NKAIN1
ZODIACNKAIN1
Ontologies - Pathways
QuickGOQ4KMZ8
Ontology : AmiGOregulation of sodium ion transport  plasma membrane  integral component of membrane  ATPase binding  
Ontology : EGO-EBIregulation of sodium ion transport  plasma membrane  integral component of membrane  ATPase binding  
NDEx NetworkNKAIN1
Atlas of Cancer Signalling NetworkNKAIN1
Wikipedia pathwaysNKAIN1
Orthology - Evolution
OrthoDB79570
GeneTree (enSembl)ENSG00000084628
Phylogenetic Trees/Animal Genes : TreeFamNKAIN1
HOVERGENQ4KMZ8
HOGENOMQ4KMZ8
Homologs : HomoloGeneNKAIN1
Homology/Alignments : Family Browser (UCSC)NKAIN1
Gene fusions - Rearrangements
Fusion : MitelmanNKAIN1/PFAS [1p35.2/17p13.1]  
Fusion : MitelmanPUM1/NKAIN1 [1p35.2/1p35.2]  [dup(1)(p35p35)]  [t(1;1)(p35;p35)]  
Fusion: TCGANKAIN1 1p35.2 PFAS 17p13.1 LUAD
Fusion: TCGAPUM1 1p35.2 NKAIN1 1p35.2 BRCA LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNKAIN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NKAIN1
dbVarNKAIN1
ClinVarNKAIN1
1000_GenomesNKAIN1 
Exome Variant ServerNKAIN1
ExAC (Exome Aggregation Consortium)NKAIN1 (select the gene name)
Genetic variants : HAPMAP79570
Genomic Variants (DGV)NKAIN1 [DGVbeta]
DECIPHER (Syndromes)1:31652592-31712734  ENSG00000084628
CONAN: Copy Number AnalysisNKAIN1 
Mutations
ICGC Data PortalNKAIN1 
TCGA Data PortalNKAIN1 
Broad Tumor PortalNKAIN1
OASIS PortalNKAIN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNKAIN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNKAIN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NKAIN1
DgiDB (Drug Gene Interaction Database)NKAIN1
DoCM (Curated mutations)NKAIN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NKAIN1 (select a term)
intoGenNKAIN1
Cancer3DNKAIN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612871   
Orphanet
MedgenNKAIN1
Genetic Testing Registry NKAIN1
NextProtQ4KMZ8 [Medical]
TSGene79570
GENETestsNKAIN1
Huge Navigator NKAIN1 [HugePedia]
snp3D : Map Gene to Disease79570
BioCentury BCIQNKAIN1
ClinGenNKAIN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79570
Chemical/Pharm GKB GenePA162397562
Clinical trialNKAIN1
Miscellaneous
canSAR (ICR)NKAIN1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNKAIN1
EVEXNKAIN1
GoPubMedNKAIN1
iHOPNKAIN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:18 CEST 2017

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