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NKAIN4 (sodium/potassium transporting ATPase interacting 4)

Identity

Alias_namesC20orf58
chromosome 20 open reading frame 58
Alias_symbol (synonym)bA261N11.2
FAM77A
Other alias
HGNC (Hugo) NKAIN4
LocusID (NCBI) 128414
Atlas_Id 70847
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63240784 and ends at 63254540 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GPBP1 (5q11.2) / NKAIN4 (20q13.33)NKAIN4 (20q13.33) / NKAIN4 (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NKAIN4   16191
Cards
Entrez_Gene (NCBI)NKAIN4  128414  sodium/potassium transporting ATPase interacting 4
AliasesC20orf58; FAM77A; bA261N11.2
GeneCards (Weizmann)NKAIN4
Ensembl hg19 (Hinxton)ENSG00000101198 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101198 [Gene_View]  chr20:63240784-63254540 [Contig_View]  NKAIN4 [Vega]
ICGC DataPortalENSG00000101198
TCGA cBioPortalNKAIN4
AceView (NCBI)NKAIN4
Genatlas (Paris)NKAIN4
WikiGenes128414
SOURCE (Princeton)NKAIN4
Genetics Home Reference (NIH)NKAIN4
Genomic and cartography
GoldenPath hg38 (UCSC)NKAIN4  -     chr20:63240784-63254540 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NKAIN4  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblNKAIN4 - 20q13.33 [CytoView hg19]  NKAIN4 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBINKAIN4 [Mapview hg19]  NKAIN4 [Mapview hg38]
OMIM612873   
Gene and transcription
Genbank (Entrez)AK126246 AK225765 AK308958 BC041812 BG708360
RefSeq transcript (Entrez)NM_152864
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NKAIN4
Cluster EST : UnigeneHs.46627 [ NCBI ]
CGAP (NCI)Hs.46627
Alternative Splicing GalleryENSG00000101198
Gene ExpressionNKAIN4 [ NCBI-GEO ]   NKAIN4 [ EBI - ARRAY_EXPRESS ]   NKAIN4 [ SEEK ]   NKAIN4 [ MEM ]
Gene Expression Viewer (FireBrowse)NKAIN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128414
GTEX Portal (Tissue expression)NKAIN4
Human Protein AtlasENSG00000101198-NKAIN4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVV8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVV8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVV8
Splice isoforms : SwissVarQ8IVV8
PhosPhoSitePlusQ8IVV8
Domains : Interpro (EBI)Na/K-Atpase_Interacting   
Domain families : Pfam (Sanger)NKAIN (PF05640)   
Domain families : Pfam (NCBI)pfam05640   
Conserved Domain (NCBI)NKAIN4
DMDM Disease mutations128414
Blocks (Seattle)NKAIN4
SuperfamilyQ8IVV8
Human Protein Atlas [tissue]ENSG00000101198-NKAIN4 [tissue]
Peptide AtlasQ8IVV8
HPRD12776
IPIIPI00383441   IPI00607701   IPI00854756   IPI00640790   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVV8
IntAct (EBI)Q8IVV8
FunCoupENSG00000101198
BioGRIDNKAIN4
STRING (EMBL)NKAIN4
ZODIACNKAIN4
Ontologies - Pathways
QuickGOQ8IVV8
Ontology : AmiGOregulation of sodium ion transport  plasma membrane  integral component of membrane  
Ontology : EGO-EBIregulation of sodium ion transport  plasma membrane  integral component of membrane  
NDEx NetworkNKAIN4
Atlas of Cancer Signalling NetworkNKAIN4
Wikipedia pathwaysNKAIN4
Orthology - Evolution
OrthoDB128414
GeneTree (enSembl)ENSG00000101198
Phylogenetic Trees/Animal Genes : TreeFamNKAIN4
HOVERGENQ8IVV8
HOGENOMQ8IVV8
Homologs : HomoloGeneNKAIN4
Homology/Alignments : Family Browser (UCSC)NKAIN4
Gene fusions - Rearrangements
Fusion: Tumor Portal NKAIN4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNKAIN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NKAIN4
dbVarNKAIN4
ClinVarNKAIN4
1000_GenomesNKAIN4 
Exome Variant ServerNKAIN4
ExAC (Exome Aggregation Consortium)ENSG00000101198
GNOMAD BrowserENSG00000101198
Genetic variants : HAPMAP128414
Genomic Variants (DGV)NKAIN4 [DGVbeta]
DECIPHERNKAIN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNKAIN4 
Mutations
ICGC Data PortalNKAIN4 
TCGA Data PortalNKAIN4 
Broad Tumor PortalNKAIN4
OASIS PortalNKAIN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNKAIN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNKAIN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NKAIN4
DgiDB (Drug Gene Interaction Database)NKAIN4
DoCM (Curated mutations)NKAIN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NKAIN4 (select a term)
intoGenNKAIN4
Cancer3DNKAIN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612873   
Orphanet
MedgenNKAIN4
Genetic Testing Registry NKAIN4
NextProtQ8IVV8 [Medical]
TSGene128414
GENETestsNKAIN4
Target ValidationNKAIN4
Huge Navigator NKAIN4 [HugePedia]
snp3D : Map Gene to Disease128414
BioCentury BCIQNKAIN4
ClinGenNKAIN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128414
Chemical/Pharm GKB GenePA162397583
Clinical trialNKAIN4
Miscellaneous
canSAR (ICR)NKAIN4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNKAIN4
EVEXNKAIN4
GoPubMedNKAIN4
iHOPNKAIN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:19:00 CET 2017

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