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NKAP (NFKB activating protein)

Identity

Alias_symbol (synonym)FLJ22626
Other alias-
HGNC (Hugo) NKAP
LocusID (NCBI) 79576
Atlas_Id 56120
Location Xq24  [Link to chromosome band Xq24]

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NKAP   29873
Cards
Entrez_Gene (NCBI)NKAP  79576  NFKB activating protein
Aliases
GeneCards (Weizmann)NKAP
Ensembl hg19 (Hinxton)ENSG00000101882 [Gene_View]  - [Contig_View]  NKAP [Vega]
Ensembl hg38 (Hinxton)ENSG00000101882 [Gene_View]  - [Contig_View]  NKAP [Vega]
ICGC DataPortalENSG00000101882
TCGA cBioPortalNKAP
AceView (NCBI)NKAP
Genatlas (Paris)NKAP
WikiGenes79576
SOURCE (Princeton)NKAP
Genetics Home Reference (NIH)NKAP
Genomic and cartography
GoldenPath hg19 (UCSC)NKAP  -  
GoldenPath hg38 (UCSC)NKAP  -  
EnsemblNKAP - [CytoView hg19]  NKAP - [CytoView hg38]
Mapping of homologs : NCBINKAP [Mapview hg19]  NKAP [Mapview hg38]
OMIM300766   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_024528
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NKAP
Cluster EST : UnigeneHs.522771 [ NCBI ]
CGAP (NCI)Hs.522771
Alternative Splicing GalleryENSG00000101882
Gene ExpressionNKAP [ NCBI-GEO ]   NKAP [ EBI - ARRAY_EXPRESS ]   NKAP [ SEEK ]   NKAP [ MEM ]
Gene Expression Viewer (FireBrowse)NKAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79576
GTEX Portal (Tissue expression)NKAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5F7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5F7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5F7
Splice isoforms : SwissVarQ8N5F7
PhosPhoSitePlusQ8N5F7
Domains : Interpro (EBI)NKAP/UPF0396   
Domain families : Pfam (Sanger)SynMuv_product (PF06047)   
Domain families : Pfam (NCBI)pfam06047   
Conserved Domain (NCBI)NKAP
DMDM Disease mutations79576
Blocks (Seattle)NKAP
SuperfamilyQ8N5F7
Human Protein AtlasENSG00000101882
Peptide AtlasQ8N5F7
HPRD06666
IPIIPI00296934   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5F7
IntAct (EBI)Q8N5F7
FunCoupENSG00000101882
BioGRIDNKAP
STRING (EMBL)NKAP
ZODIACNKAP
Ontologies - Pathways
QuickGOQ8N5F7
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  chromatin binding  protein binding  nucleoplasm  cytoplasm  transcription, DNA-templated  Notch signaling pathway  stem cell population maintenance  granulocyte differentiation  chromatin DNA binding  T cell differentiation in thymus  poly(A) RNA binding  negative regulation of transcription, DNA-templated  positive regulation of alpha-beta T cell differentiation  hematopoietic stem cell proliferation  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  chromatin binding  protein binding  nucleoplasm  cytoplasm  transcription, DNA-templated  Notch signaling pathway  stem cell population maintenance  granulocyte differentiation  chromatin DNA binding  T cell differentiation in thymus  poly(A) RNA binding  negative regulation of transcription, DNA-templated  positive regulation of alpha-beta T cell differentiation  hematopoietic stem cell proliferation  positive regulation of protein targeting to mitochondrion  
NDEx NetworkNKAP
Atlas of Cancer Signalling NetworkNKAP
Wikipedia pathwaysNKAP
Orthology - Evolution
OrthoDB79576
GeneTree (enSembl)ENSG00000101882
Phylogenetic Trees/Animal Genes : TreeFamNKAP
HOVERGENQ8N5F7
HOGENOMQ8N5F7
Homologs : HomoloGeneNKAP
Homology/Alignments : Family Browser (UCSC)NKAP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNKAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NKAP
dbVarNKAP
ClinVarNKAP
1000_GenomesNKAP 
Exome Variant ServerNKAP
ExAC (Exome Aggregation Consortium)NKAP (select the gene name)
Genetic variants : HAPMAP79576
Genomic Variants (DGV)NKAP [DGVbeta]
DECIPHER (Syndromes)-  ENSG00000101882
CONAN: Copy Number AnalysisNKAP 
Mutations
ICGC Data PortalNKAP 
TCGA Data PortalNKAP 
Broad Tumor PortalNKAP
OASIS PortalNKAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNKAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNKAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch NKAP
DgiDB (Drug Gene Interaction Database)NKAP
DoCM (Curated mutations)NKAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NKAP (select a term)
intoGenNKAP
Cancer3DNKAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300766   
Orphanet
MedgenNKAP
Genetic Testing Registry NKAP
NextProtQ8N5F7 [Medical]
TSGene79576
GENETestsNKAP
Huge Navigator NKAP [HugePedia]
snp3D : Map Gene to Disease79576
BioCentury BCIQNKAP
ClinGenNKAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79576
Chemical/Pharm GKB GenePA162397584
Clinical trialNKAP
Miscellaneous
canSAR (ICR)NKAP (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNKAP
EVEXNKAP
GoPubMedNKAP
iHOPNKAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:18 CEST 2017

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