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NKAPD1 (NKAP domain containing 1)

Identity

Alias_namesC11orf57
chromosome 11 open reading frame 57
Alias_symbol (synonym)FLJ10726
Other alias
HGNC (Hugo) NKAPD1
LocusID (NCBI) 55216
Atlas_Id 79883
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 112074244 and ends at 112085150 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NKAPD1   25569
Cards
Entrez_Gene (NCBI)NKAPD1  55216  NKAP domain containing 1
AliasesC11orf57
GeneCards (Weizmann)NKAPD1
Ensembl hg19 (Hinxton)ENSG00000150776 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150776 [Gene_View]  chr11:112074244-112085150 [Contig_View]  NKAPD1 [Vega]
ICGC DataPortalENSG00000150776
TCGA cBioPortalNKAPD1
AceView (NCBI)NKAPD1
Genatlas (Paris)NKAPD1
WikiGenes55216
SOURCE (Princeton)NKAPD1
Genetics Home Reference (NIH)NKAPD1
Genomic and cartography
GoldenPath hg38 (UCSC)NKAPD1  -     chr11:112074244-112085150 +  11q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NKAPD1  -     11q23.1   [Description]    (hg19-Feb_2009)
EnsemblNKAPD1 - 11q23.1 [CytoView hg19]  NKAPD1 - 11q23.1 [CytoView hg38]
Mapping of homologs : NCBINKAPD1 [Mapview hg19]  NKAPD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096251 AK001588 AK094203 AK125340 BC005403
RefSeq transcript (Entrez)NM_001082969 NM_001082970 NM_001301017 NM_001301019 NM_001301021 NM_018195
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NKAPD1
Cluster EST : UnigeneHs.195060 [ NCBI ]
CGAP (NCI)Hs.195060
Alternative Splicing GalleryENSG00000150776
Gene ExpressionNKAPD1 [ NCBI-GEO ]   NKAPD1 [ EBI - ARRAY_EXPRESS ]   NKAPD1 [ SEEK ]   NKAPD1 [ MEM ]
Gene Expression Viewer (FireBrowse)NKAPD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55216
GTEX Portal (Tissue expression)NKAPD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUT1
Splice isoforms : SwissVarQ6ZUT1
PhosPhoSitePlusQ6ZUT1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NKAPD1
DMDM Disease mutations55216
Blocks (Seattle)NKAPD1
SuperfamilyQ6ZUT1
Human Protein AtlasENSG00000150776
Peptide AtlasQ6ZUT1
IPIIPI00827642   IPI00827592   IPI00465189   IPI00018904   IPI00983431   IPI00976832   IPI00984599   IPI00977409   IPI00984127   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUT1
IntAct (EBI)Q6ZUT1
FunCoupENSG00000150776
BioGRIDNKAPD1
STRING (EMBL)NKAPD1
ZODIACNKAPD1
Ontologies - Pathways
QuickGOQ6ZUT1
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkNKAPD1
Atlas of Cancer Signalling NetworkNKAPD1
Wikipedia pathwaysNKAPD1
Orthology - Evolution
OrthoDB55216
GeneTree (enSembl)ENSG00000150776
Phylogenetic Trees/Animal Genes : TreeFamNKAPD1
HOVERGENQ6ZUT1
HOGENOMQ6ZUT1
Homologs : HomoloGeneNKAPD1
Homology/Alignments : Family Browser (UCSC)NKAPD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNKAPD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NKAPD1
dbVarNKAPD1
ClinVarNKAPD1
1000_GenomesNKAPD1 
Exome Variant ServerNKAPD1
ExAC (Exome Aggregation Consortium)NKAPD1 (select the gene name)
Genetic variants : HAPMAP55216
Genomic Variants (DGV)NKAPD1 [DGVbeta]
DECIPHERNKAPD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNKAPD1 
Mutations
ICGC Data PortalNKAPD1 
TCGA Data PortalNKAPD1 
Broad Tumor PortalNKAPD1
OASIS PortalNKAPD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNKAPD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NKAPD1
DgiDB (Drug Gene Interaction Database)NKAPD1
DoCM (Curated mutations)NKAPD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NKAPD1 (select a term)
intoGenNKAPD1
Cancer3DNKAPD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNKAPD1
Genetic Testing Registry NKAPD1
NextProtQ6ZUT1 [Medical]
TSGene55216
GENETestsNKAPD1
Target ValidationNKAPD1
Huge Navigator NKAPD1 [HugePedia]
snp3D : Map Gene to Disease55216
BioCentury BCIQNKAPD1
ClinGenNKAPD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55216
Chemical/Pharm GKB GenePA143485352
Clinical trialNKAPD1
Miscellaneous
canSAR (ICR)NKAPD1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNKAPD1
EVEXNKAPD1
GoPubMedNKAPD1
iHOPNKAPD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:03 CEST 2017

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