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NKAPL (NFKB activating protein like)

Identity

Alias_namesC6orf194
chromosome 6 open reading frame 194
NFKB activating protein-like
Alias_symbol (synonym)bA424I5.1
Other alias
HGNC (Hugo) NKAPL
LocusID (NCBI) 222698
Atlas_Id 70849
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28259297 and ends at 28260958 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NKAPL   21584
Cards
Entrez_Gene (NCBI)NKAPL  222698  NFKB activating protein like
AliasesC6orf194; bA424I5.1
GeneCards (Weizmann)NKAPL
Ensembl hg19 (Hinxton)ENSG00000189134 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189134 [Gene_View]  ENSG00000189134 [Sequence]  chr6:28259297-28260958 [Contig_View]  NKAPL [Vega]
ICGC DataPortalENSG00000189134
TCGA cBioPortalNKAPL
AceView (NCBI)NKAPL
Genatlas (Paris)NKAPL
WikiGenes222698
SOURCE (Princeton)NKAPL
Genetics Home Reference (NIH)NKAPL
Genomic and cartography
GoldenPath hg38 (UCSC)NKAPL  -     chr6:28259297-28260958 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NKAPL  -     6p22.1   [Description]    (hg19-Feb_2009)
GoldenPathNKAPL - 6p22.1 [CytoView hg19]  NKAPL - 6p22.1 [CytoView hg38]
ImmunoBaseENSG00000189134
Mapping of homologs : NCBINKAPL [Mapview hg19]  NKAPL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF085870 AI240405 BC038240 BC101681 BC101685
RefSeq transcript (Entrez)NM_001007531
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NKAPL
Alternative Splicing GalleryENSG00000189134
Gene ExpressionNKAPL [ NCBI-GEO ]   NKAPL [ EBI - ARRAY_EXPRESS ]   NKAPL [ SEEK ]   NKAPL [ MEM ]
Gene Expression Viewer (FireBrowse)NKAPL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222698
GTEX Portal (Tissue expression)NKAPL
Human Protein AtlasENSG00000189134-NKAPL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5M9Q1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5M9Q1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5M9Q1
Splice isoforms : SwissVarQ5M9Q1
PhosPhoSitePlusQ5M9Q1
Domains : Interpro (EBI)NKAP    NKAP_C   
Domain families : Pfam (Sanger)Nkap_C (PF06047)   
Domain families : Pfam (NCBI)pfam06047   
Conserved Domain (NCBI)NKAPL
DMDM Disease mutations222698
Blocks (Seattle)NKAPL
SuperfamilyQ5M9Q1
Human Protein Atlas [tissue]ENSG00000189134-NKAPL [tissue]
Peptide AtlasQ5M9Q1
HPRD16664
IPIIPI00014757   
Protein Interaction databases
DIP (DOE-UCLA)Q5M9Q1
IntAct (EBI)Q5M9Q1
FunCoupENSG00000189134
BioGRIDNKAPL
STRING (EMBL)NKAPL
ZODIACNKAPL
Ontologies - Pathways
QuickGOQ5M9Q1
Ontology : AmiGOchromatin binding  nucleus  Notch signaling pathway  spermatogenesis  cell differentiation  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIchromatin binding  nucleus  Notch signaling pathway  spermatogenesis  cell differentiation  negative regulation of transcription, DNA-templated  
NDEx NetworkNKAPL
Atlas of Cancer Signalling NetworkNKAPL
Wikipedia pathwaysNKAPL
Orthology - Evolution
OrthoDB222698
GeneTree (enSembl)ENSG00000189134
Phylogenetic Trees/Animal Genes : TreeFamNKAPL
HOGENOMQ5M9Q1
Homologs : HomoloGeneNKAPL
Homology/Alignments : Family Browser (UCSC)NKAPL
Gene fusions - Rearrangements
Fusion : QuiverNKAPL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNKAPL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NKAPL
dbVarNKAPL
ClinVarNKAPL
1000_GenomesNKAPL 
Exome Variant ServerNKAPL
ExAC (Exome Aggregation Consortium)ENSG00000189134
GNOMAD BrowserENSG00000189134
Varsome BrowserNKAPL
Genetic variants : HAPMAP222698
Genomic Variants (DGV)NKAPL [DGVbeta]
DECIPHERNKAPL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNKAPL 
Mutations
ICGC Data PortalNKAPL 
TCGA Data PortalNKAPL 
Broad Tumor PortalNKAPL
OASIS PortalNKAPL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNKAPL  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNKAPL
Mutations and Diseases : HGMDNKAPL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NKAPL
DgiDB (Drug Gene Interaction Database)NKAPL
DoCM (Curated mutations)NKAPL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NKAPL (select a term)
intoGenNKAPL
Cancer3DNKAPL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNKAPL
MedgenNKAPL
Genetic Testing Registry NKAPL
NextProtQ5M9Q1 [Medical]
TSGene222698
GENETestsNKAPL
Target ValidationNKAPL
Huge Navigator NKAPL [HugePedia]
snp3D : Map Gene to Disease222698
BioCentury BCIQNKAPL
ClinGenNKAPL
Clinical trials, drugs, therapy
Protein Interactions : CTD222698
Pharm GKB GenePA162397607
Clinical trialNKAPL
Miscellaneous
canSAR (ICR)NKAPL (select the gene name)
HarmonizomeNKAPL
DataMed IndexNKAPL
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNKAPL
EVEXNKAPL
GoPubMedNKAPL
iHOPNKAPL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Jun 30 19:55:53 CEST 2020
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