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NKPD1 (NTPase KAP family P-loop domain containing 1)

Identity

Alias_symbol (synonym)FLJ33600
Other alias-
HGNC (Hugo) NKPD1
LocusID (NCBI) 284353
Atlas_Id 70853
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 45149750 and ends at 45160150 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NKPD1   24739
Cards
Entrez_Gene (NCBI)NKPD1  284353  NTPase KAP family P-loop domain containing 1
Aliases
GeneCards (Weizmann)NKPD1
Ensembl hg19 (Hinxton)ENSG00000179846 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179846 [Gene_View]  chr19:45149750-45160150 [Contig_View]  NKPD1 [Vega]
ICGC DataPortalENSG00000179846
TCGA cBioPortalNKPD1
AceView (NCBI)NKPD1
Genatlas (Paris)NKPD1
WikiGenes284353
SOURCE (Princeton)NKPD1
Genetics Home Reference (NIH)NKPD1
Genomic and cartography
GoldenPath hg38 (UCSC)NKPD1  -     chr19:45149750-45160150 -  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NKPD1  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblNKPD1 - 19q13.32 [CytoView hg19]  NKPD1 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBINKPD1 [Mapview hg19]  NKPD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC117228 BC143792 EG328190 EG328439 HQ258581
RefSeq transcript (Entrez)NM_198478
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NKPD1
Cluster EST : UnigeneHs.299256 [ NCBI ]
CGAP (NCI)Hs.299256
Alternative Splicing GalleryENSG00000179846
Gene ExpressionNKPD1 [ NCBI-GEO ]   NKPD1 [ EBI - ARRAY_EXPRESS ]   NKPD1 [ SEEK ]   NKPD1 [ MEM ]
Gene Expression Viewer (FireBrowse)NKPD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284353
GTEX Portal (Tissue expression)NKPD1
Human Protein AtlasENSG00000179846-NKPD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RQ9
Splice isoforms : SwissVarQ17RQ9
PhosPhoSitePlusQ17RQ9
Domains : Interpro (EBI)<ŻA>>TD>KAP_P-loop   
Domain families : Pfam (Sanger)KAP_NTPase (PF07693)   
Domain families : Pfam (NCBI)pfam07693   
Conserved Domain (NCBI)NKPD1
DMDM Disease mutations284353
Blocks (Seattle)NKPD1
SuperfamilyQ17RQ9
Human Protein Atlas [tissue]ENSG00000179846-NKPD1 [tissue]
Peptide AtlasQ17RQ9
HPRD11393
IPIIPI00853553   IPI00296103   
Protein Interaction databases
DIP (DOE-UCLA)Q17RQ9
IntAct (EBI)Q17RQ9
FunCoupENSG00000179846
BioGRIDNKPD1
STRING (EMBL)NKPD1
ZODIACNKPD1
Ontologies - Pathways
QuickGOQ17RQ9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkNKPD1
Atlas of Cancer Signalling NetworkNKPD1
Wikipedia pathwaysNKPD1
Orthology - Evolution
OrthoDB284353
GeneTree (enSembl)ENSG00000179846
Phylogenetic Trees/Animal Genes : TreeFamNKPD1
HOVERGENQ17RQ9
HOGENOMQ17RQ9
Homologs : HomoloGeneNKPD1
Homology/Alignments : Family Browser (UCSC)NKPD1
Gene fusions - Rearrangements
Tumor Fusion PortalNKPD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNKPD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NKPD1
dbVarNKPD1
ClinVarNKPD1
1000_GenomesNKPD1 
Exome Variant ServerNKPD1
ExAC (Exome Aggregation Consortium)ENSG00000179846
GNOMAD BrowserENSG00000179846
Genetic variants : HAPMAP284353
Genomic Variants (DGV)NKPD1 [DGVbeta]
DECIPHERNKPD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNKPD1 
Mutations
ICGC Data PortalNKPD1 
TCGA Data PortalNKPD1 
Broad Tumor PortalNKPD1
OASIS PortalNKPD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNKPD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNKPD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NKPD1
DgiDB (Drug Gene Interaction Database)NKPD1
DoCM (Curated mutations)NKPD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NKPD1 (select a term)
intoGenNKPD1
Cancer3DNKPD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNKPD1
MedgenNKPD1
Genetic Testing Registry NKPD1
NextProtQ17RQ9 [Medical]
TSGene284353
GENETestsNKPD1
Target ValidationNKPD1
Huge Navigator NKPD1 [HugePedia]
snp3D : Map Gene to Disease284353
BioCentury BCIQNKPD1
ClinGenNKPD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284353
Chemical/Pharm GKB GenePA134993651
Clinical trialNKPD1
Miscellaneous
canSAR (ICR)NKPD1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNKPD1
EVEXNKPD1
GoPubMedNKPD1
iHOPNKPD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:39:26 CET 2017

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