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NKRF (NFKB repressing factor)

Identity

Alias_namesNF-kappaB repressing factor
Alias_symbol (synonym)ITBA4
NRF
Other alias
HGNC (Hugo) NKRF
LocusID (NCBI) 55922
Atlas_Id 47066
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 118722300 and ends at 118739846 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NKRF (Xq24) / UBE2A (Xq24)NKRF Xq24 / UBE2A Xq24

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NKRF   19374
Cards
Entrez_Gene (NCBI)NKRF  55922  NFKB repressing factor
AliasesITBA4; NRF
GeneCards (Weizmann)NKRF
Ensembl hg19 (Hinxton)ENSG00000186416 [Gene_View]  chrX:118722300-118739846 [Contig_View]  NKRF [Vega]
Ensembl hg38 (Hinxton)ENSG00000186416 [Gene_View]  chrX:118722300-118739846 [Contig_View]  NKRF [Vega]
ICGC DataPortalENSG00000186416
TCGA cBioPortalNKRF
AceView (NCBI)NKRF
Genatlas (Paris)NKRF
WikiGenes55922
SOURCE (Princeton)NKRF
Genetics Home Reference (NIH)NKRF
Genomic and cartography
GoldenPath hg19 (UCSC)NKRF  -     chrX:118722300-118739846 -  Xq24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NKRF  -     Xq24   [Description]    (hg38-Dec_2013)
EnsemblNKRF - Xq24 [CytoView hg19]  NKRF - Xq24 [CytoView hg38]
Mapping of homologs : NCBINKRF [Mapview hg19]  NKRF [Mapview hg38]
OMIM300440   
Gene and transcription
Genbank (Entrez)AA845622 AJ011812 AL539002 AY208891 BC040379
RefSeq transcript (Entrez)NM_001173487 NM_001173488 NM_017544
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016800 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)NKRF
Cluster EST : UnigeneHs.437084 [ NCBI ]
CGAP (NCI)Hs.437084
Alternative Splicing GalleryENSG00000186416
Gene ExpressionNKRF [ NCBI-GEO ]   NKRF [ EBI - ARRAY_EXPRESS ]   NKRF [ SEEK ]   NKRF [ MEM ]
Gene Expression Viewer (FireBrowse)NKRF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55922
GTEX Portal (Tissue expression)NKRF
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15226   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15226  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15226
Splice isoforms : SwissVarO15226
PhosPhoSitePlusO15226
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)    R3H (PS51061)   
Domains : Interpro (EBI)dsRBD_dom    G_patch_dom    R3H_dom   
Domain families : Pfam (Sanger)G-patch (PF01585)    R3H (PF01424)   
Domain families : Pfam (NCBI)pfam01585    pfam01424   
Domain families : Smart (EMBL)DSRM (SM00358)  G_patch (SM00443)  R3H (SM00393)  
Conserved Domain (NCBI)NKRF
DMDM Disease mutations55922
Blocks (Seattle)NKRF
SuperfamilyO15226
Human Protein AtlasENSG00000186416
Peptide AtlasO15226
HPRD02341
IPIIPI00005675   IPI00956309   
Protein Interaction databases
DIP (DOE-UCLA)O15226
IntAct (EBI)O15226
FunCoupENSG00000186416
BioGRIDNKRF
STRING (EMBL)NKRF
ZODIACNKRF
Ontologies - Pathways
QuickGOO15226
Ontology : AmiGODNA binding  protein binding  nucleus  nucleolus  endoplasmic reticulum  transcription, DNA-templated  poly(A) RNA binding  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  nucleolus  endoplasmic reticulum  transcription, DNA-templated  poly(A) RNA binding  negative regulation of transcription, DNA-templated  
NDEx NetworkNKRF
Atlas of Cancer Signalling NetworkNKRF
Wikipedia pathwaysNKRF
Orthology - Evolution
OrthoDB55922
GeneTree (enSembl)ENSG00000186416
Phylogenetic Trees/Animal Genes : TreeFamNKRF
HOVERGENO15226
HOGENOMO15226
Homologs : HomoloGeneNKRF
Homology/Alignments : Family Browser (UCSC)NKRF
Gene fusions - Rearrangements
Fusion: TCGANKRF Xq24 UBE2A Xq24 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNKRF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NKRF
dbVarNKRF
ClinVarNKRF
1000_GenomesNKRF 
Exome Variant ServerNKRF
ExAC (Exome Aggregation Consortium)NKRF (select the gene name)
Genetic variants : HAPMAP55922
Genomic Variants (DGV)NKRF [DGVbeta]
DECIPHER (Syndromes)X:118722300-118739846  ENSG00000186416
CONAN: Copy Number AnalysisNKRF 
Mutations
ICGC Data PortalNKRF 
TCGA Data PortalNKRF 
Broad Tumor PortalNKRF
OASIS PortalNKRF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNKRF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNKRF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch NKRF
DgiDB (Drug Gene Interaction Database)NKRF
DoCM (Curated mutations)NKRF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NKRF (select a term)
intoGenNKRF
Cancer3DNKRF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300440   
Orphanet
MedgenNKRF
Genetic Testing Registry NKRF
NextProtO15226 [Medical]
TSGene55922
GENETestsNKRF
Huge Navigator NKRF [HugePedia]
snp3D : Map Gene to Disease55922
BioCentury BCIQNKRF
ClinGenNKRF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55922
Chemical/Pharm GKB GenePA134990602
Clinical trialNKRF
Miscellaneous
canSAR (ICR)NKRF (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNKRF
EVEXNKRF
GoPubMedNKRF
iHOPNKRF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:19 CEST 2017

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