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NKTR (natural killer cell triggering receptor)

Identity

Alias_namesnatural killer-tumor recognition sequence
Alias_symbol (synonym)p104
Other alias
HGNC (Hugo) NKTR
LocusID (NCBI) 4820
Atlas_Id 41540
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42600655 and ends at 42648741 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NKTR (3p22.1) / NKTR (3p22.1)NKTR (3p22.1) / RBFOX2 (22q12.3)NKTR (3p22.1) / TNC (9q33.1)
TM9SF4 (20q11.21) / NKTR (3p22.1)ZFP1 (16q23.1) / NKTR (3p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NKTR   7833
Cards
Entrez_Gene (NCBI)NKTR  4820  natural killer cell triggering receptor
Aliasesp104
GeneCards (Weizmann)NKTR
Ensembl hg19 (Hinxton)ENSG00000114857 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114857 [Gene_View]  chr3:42600655-42648741 [Contig_View]  NKTR [Vega]
ICGC DataPortalENSG00000114857
TCGA cBioPortalNKTR
AceView (NCBI)NKTR
Genatlas (Paris)NKTR
WikiGenes4820
SOURCE (Princeton)NKTR
Genetics Home Reference (NIH)NKTR
Genomic and cartography
GoldenPath hg38 (UCSC)NKTR  -     chr3:42600655-42648741 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NKTR  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblNKTR - 3p22.1 [CytoView hg19]  NKTR - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBINKTR [Mapview hg19]  NKTR [Mapview hg38]
OMIM161565   
Gene and transcription
Genbank (Entrez)AA493639 AB209888 AK097208 AK126234 AK292017
RefSeq transcript (Entrez)NM_001012651 NM_001349124 NM_001349125 NM_001349126 NM_005385
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NKTR
Cluster EST : UnigeneHs.529509 [ NCBI ]
CGAP (NCI)Hs.529509
Alternative Splicing GalleryENSG00000114857
Gene ExpressionNKTR [ NCBI-GEO ]   NKTR [ EBI - ARRAY_EXPRESS ]   NKTR [ SEEK ]   NKTR [ MEM ]
Gene Expression Viewer (FireBrowse)NKTR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4820
GTEX Portal (Tissue expression)NKTR
Protein : pattern, domain, 3D structure
UniProt/SwissProtP30414   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP30414  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP30414
Splice isoforms : SwissVarP30414
Catalytic activity : Enzyme5.2.1.8 [ Enzyme-Expasy ]   5.2.1.85.2.1.8 [ IntEnz-EBI ]   5.2.1.8 [ BRENDA ]   5.2.1.8 [ KEGG ]   
PhosPhoSitePlusP30414
Domaine pattern : Prosite (Expaxy)CSA_PPIASE_1 (PS00170)    CSA_PPIASE_2 (PS50072)   
Domains : Interpro (EBI)Cyclophilin-like_dom    Cyclophilin-type_PPIase    Cyclophilin-type_PPIase_CS    Cyclophilin-type_PPIase_dom   
Domain families : Pfam (Sanger)Pro_isomerase (PF00160)   
Domain families : Pfam (NCBI)pfam00160   
Conserved Domain (NCBI)NKTR
DMDM Disease mutations4820
Blocks (Seattle)NKTR
PDB (SRS)2HE9   
PDB (PDBSum)2HE9   
PDB (IMB)2HE9   
PDB (RSDB)2HE9   
Structural Biology KnowledgeBase2HE9   
SCOP (Structural Classification of Proteins)2HE9   
CATH (Classification of proteins structures)2HE9   
SuperfamilyP30414
Human Protein AtlasENSG00000114857
Peptide AtlasP30414
HPRD01195
IPIIPI00295022   IPI00816135   IPI00446644   IPI00925424   
Protein Interaction databases
DIP (DOE-UCLA)P30414
IntAct (EBI)P30414
FunCoupENSG00000114857
BioGRIDNKTR
STRING (EMBL)NKTR
ZODIACNKTR
Ontologies - Pathways
QuickGOP30414
Ontology : AmiGOprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  nucleoplasm  mitochondrion  cytosol  plasma membrane  protein folding  cyclosporin A binding  
Ontology : EGO-EBIprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  nucleoplasm  mitochondrion  cytosol  plasma membrane  protein folding  cyclosporin A binding  
NDEx NetworkNKTR
Atlas of Cancer Signalling NetworkNKTR
Wikipedia pathwaysNKTR
Orthology - Evolution
OrthoDB4820
GeneTree (enSembl)ENSG00000114857
Phylogenetic Trees/Animal Genes : TreeFamNKTR
HOVERGENP30414
HOGENOMP30414
Homologs : HomoloGeneNKTR
Homology/Alignments : Family Browser (UCSC)NKTR
Gene fusions - Rearrangements
Fusion Cancer (Beijing)NKTR [3p22.1]  -  TNC [9q33.1]  [FUSC003467]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNKTR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NKTR
dbVarNKTR
ClinVarNKTR
1000_GenomesNKTR 
Exome Variant ServerNKTR
ExAC (Exome Aggregation Consortium)NKTR (select the gene name)
Genetic variants : HAPMAP4820
Genomic Variants (DGV)NKTR [DGVbeta]
DECIPHERNKTR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNKTR 
Mutations
ICGC Data PortalNKTR 
TCGA Data PortalNKTR 
Broad Tumor PortalNKTR
OASIS PortalNKTR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNKTR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNKTR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NKTR
DgiDB (Drug Gene Interaction Database)NKTR
DoCM (Curated mutations)NKTR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NKTR (select a term)
intoGenNKTR
Cancer3DNKTR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM161565   
Orphanet
MedgenNKTR
Genetic Testing Registry NKTR
NextProtP30414 [Medical]
TSGene4820
GENETestsNKTR
Target ValidationNKTR
Huge Navigator NKTR [HugePedia]
snp3D : Map Gene to Disease4820
BioCentury BCIQNKTR
ClinGenNKTR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4820
Chemical/Pharm GKB GenePA31641
Clinical trialNKTR
Miscellaneous
canSAR (ICR)NKTR (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNKTR
EVEXNKTR
GoPubMedNKTR
iHOPNKTR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:01:40 CEST 2017

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