Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NKX2-1-AS1 (NKX2-1 antisense RNA 1)

Identity

Alias_namesNKX2-1 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) NKX2-1-AS1
LocusID (NCBI) 100506237
Atlas_Id 70856
Location 14q13.3  [Link to chromosome band 14q13]
Location_base_pair Starts at 36519278 and ends at 36523016 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NKX2-1-AS1   40585
Cards
Entrez_Gene (NCBI)NKX2-1-AS1  100506237  NKX2-1 antisense RNA 1
Aliases
GeneCards (Weizmann)NKX2-1-AS1
Ensembl hg19 (Hinxton)ENSG00000253563 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253563 [Gene_View]  chr14:36519278-36523016 [Contig_View]  NKX2-1-AS1 [Vega]
ICGC DataPortalENSG00000253563
TCGA cBioPortalNKX2-1-AS1
AceView (NCBI)NKX2-1-AS1
Genatlas (Paris)NKX2-1-AS1
WikiGenes100506237
SOURCE (Princeton)NKX2-1-AS1
Genetics Home Reference (NIH)NKX2-1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)NKX2-1-AS1  -     chr14:36519278-36523016 +  14q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NKX2-1-AS1  -     14q13.3   [Description]    (hg19-Feb_2009)
EnsemblNKX2-1-AS1 - 14q13.3 [CytoView hg19]  NKX2-1-AS1 - 14q13.3 [CytoView hg38]
Mapping of homologs : NCBINKX2-1-AS1 [Mapview hg19]  NKX2-1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX114409 BX161496 DA256249
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NKX2-1-AS1
Cluster EST : UnigeneHs.497090 [ NCBI ]
CGAP (NCI)Hs.497090
Alternative Splicing GalleryENSG00000253563
Gene ExpressionNKX2-1-AS1 [ NCBI-GEO ]   NKX2-1-AS1 [ EBI - ARRAY_EXPRESS ]   NKX2-1-AS1 [ SEEK ]   NKX2-1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)NKX2-1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506237
GTEX Portal (Tissue expression)NKX2-1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NKX2-1-AS1
DMDM Disease mutations100506237
Blocks (Seattle)NKX2-1-AS1
Human Protein AtlasENSG00000253563
IPIIPI00384048   
Protein Interaction databases
FunCoupENSG00000253563
BioGRIDNKX2-1-AS1
STRING (EMBL)NKX2-1-AS1
ZODIACNKX2-1-AS1
Ontologies - Pathways
Huge Navigator NKX2-1-AS1 [HugePedia]
snp3D : Map Gene to Disease100506237
BioCentury BCIQNKX2-1-AS1
ClinGenNKX2-1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506237
Clinical trialNKX2-1-AS1
Miscellaneous
canSAR (ICR)NKX2-1-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNKX2-1-AS1
EVEXNKX2-1-AS1
GoPubMedNKX2-1-AS1
iHOPNKX2-1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:45:03 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.