NKX3-1 (NK3 homeobox 1)

Identity

Other names	BAPX2
	NKX3
	NKX3.1
	NKX3A
HGNC	NKX3-1
Location	8p21.2
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	NKX3-1   7838
Entrez_Gene	NKX3-1  4824  NK3 homeobox 1
	Cards
GeneCards	NKX3-1
Ensembl	NKX3-1 [Search_View]   ENSG00000167034 [Gene_View]
Genatlas	NKX3-1
GeneLynx	NKX3-1
eGenome	NKX3-1
euGene	4824
	Genomic and cartography
GoldenPath	NKX3-1  -  8p21.2   chr8:23592173-23596395 -  8p21.2   [Description]    (hg18-March_2006)
Ensembl	NKX3-1 - 8p21.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	NKX3-1
	Gene and transcription
Genbank	AF247704 [ ENTREZ ]
Genbank	AF249669 [ ENTREZ ]
Genbank	AF249670 [ ENTREZ ]
Genbank	AF249671 [ ENTREZ ]
Genbank	AF249672 [ ENTREZ ]
RefSeq	NM_006167 [ SRS ]    NM_006167 [ ENTREZ ]
RefSeq	AC_000051 [ SRS ]    AC_000051 [ ENTREZ ]
RefSeq	AC_000140 [ SRS ]    AC_000140 [ ENTREZ ]
RefSeq	NC_000008 [ SRS ]    NC_000008 [ ENTREZ ]
RefSeq	NT_023666 [ SRS ]    NT_023666 [ ENTREZ ]
RefSeq	NW_001839127 [ SRS ]    NW_001839127 [ ENTREZ ]
RefSeq	NW_923907 [ SRS ]    NW_923907 [ ENTREZ ]
AceView	NKX3-1 AceView - NCBI
Unigene	Hs.55999 [ SRS ]    Hs.55999 [ NCBI ]     HS55999 [ spliceNest ]
Fast-db	2709 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q99801 [ SRS]    Q99801 [ EXPASY ]     Q99801 [ INTERPRO ]     Q99801 [ UNIPROT ]
Prosite	PS00027 HOMEOBOX_1 [ SRS ]    PS00027 HOMEOBOX_1 [ Expasy ]
Prosite	PS50071 HOMEOBOX_2 [ SRS ]    PS50071 HOMEOBOX_2 [ Expasy ]
Interpro	IPR001356 Homeobox [ SRS ]    IPR001356 Homeobox [ EBI ]
Interpro	IPR012287 Homeodomain-rel [ SRS ]    IPR012287 Homeodomain-rel [ EBI ]
Interpro	IPR000047 HTH_lambrepressr [ SRS ]    IPR000047 HTH_lambrepressr [ EBI ]
CluSTr	Q99801
Pfam	PF00046 Homeobox [ SRS ]    PF00046 Homeobox [ Sanger ]    pfam00046 [ NCBI-CDD ]
Smart	SM00389 HOX [EMBL]
Prodom	PD000010 Homeobox[INRA-Toulouse]
Prodom	Q99801 NKX31_HUMAN [ Domain structure ]   Q99801 NKX31_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q99801
HPRD	03620
	Protein Interaction databases
DIP	Q99801
IntAct	Q99801
	Polymorphism : SNP, mutations, diseases
OMIM	602041    [ map ]
GENECLINICS	602041
SNP	NKX3-1 [dbSNP-NCBI]
SNP	NM_006167 [SNP-NCI]
SNP	NKX3-1 [GeneSNPs - Utah]  NKX3-1] [HGBASE - SRS]
HAPMAP	NKX3-1 [HAPMAP]
HGMD	NKX3-1
	General knowledge
Family Browser	NKX3-1 [UCSC Family Browser]
SOURCE	NM_006167
SMD	Hs.55999
SAGE	Hs.55999
GO	transcription factor activity [Amigo]  transcription factor activity
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	multicellular organismal development [Amigo]  multicellular organismal development
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
PubGene	NKX3-1
TreeFam	NKX3-1
CTD	4824 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	NKX3-1 Related clones (RZPD - Berlin)
	PubMed
PubMed	40 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:22:12 2008