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NLRP11 (NLR family pyrin domain containing 11)

Identity

Alias_namesNALP11
NACHT, leucine rich repeat and PYD containing 11
Alias_symbol (synonym)PYPAF6
NOD17
PAN10
CLR19.6
Other aliasPYPAF7
HGNC (Hugo) NLRP11
LocusID (NCBI) 204801
Atlas_Id 70872
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55785397 and ends at 55832094 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PTPN14 (1q41) / NLRP11 (19q13.42)ZNF331 (19q13.42) / NLRP11 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NLRP11   22945
Cards
Entrez_Gene (NCBI)NLRP11  204801  NLR family pyrin domain containing 11
AliasesCLR19.6; NALP11; NOD17; PAN10; 
PYPAF6; PYPAF7
GeneCards (Weizmann)NLRP11
Ensembl hg19 (Hinxton)ENSG00000179873 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179873 [Gene_View]  chr19:55785397-55832094 [Contig_View]  NLRP11 [Vega]
ICGC DataPortalENSG00000179873
TCGA cBioPortalNLRP11
AceView (NCBI)NLRP11
Genatlas (Paris)NLRP11
WikiGenes204801
SOURCE (Princeton)NLRP11
Genetics Home Reference (NIH)NLRP11
Genomic and cartography
GoldenPath hg38 (UCSC)NLRP11  -     chr19:55785397-55832094 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NLRP11  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblNLRP11 - 19q13.42 [CytoView hg19]  NLRP11 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBINLRP11 [Mapview hg19]  NLRP11 [Mapview hg38]
OMIM609664   
Gene and transcription
Genbank (Entrez)AK090621 AK129784 AK310394 AY095145 AY154466
RefSeq transcript (Entrez)NM_001297743 NM_145007
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NLRP11
Cluster EST : UnigeneHs.375039 [ NCBI ]
CGAP (NCI)Hs.375039
Alternative Splicing GalleryENSG00000179873
Gene ExpressionNLRP11 [ NCBI-GEO ]   NLRP11 [ EBI - ARRAY_EXPRESS ]   NLRP11 [ SEEK ]   NLRP11 [ MEM ]
Gene Expression Viewer (FireBrowse)NLRP11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)204801
GTEX Portal (Tissue expression)NLRP11
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59045   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59045  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59045
Splice isoforms : SwissVarP59045
PhosPhoSitePlusP59045
Domaine pattern : Prosite (Expaxy)DAPIN (PS50824)    NACHT (PS50837)   
Domains : Interpro (EBI)Cu2_ascorb_mOase_CS-1    DAPIN    DEATH-like_dom    L_dom-like    Leu-rich_rpt    NACHT_NTPase   
Domain families : Pfam (Sanger)LRR_6 (PF13516)    PYRIN (PF02758)   
Domain families : Pfam (NCBI)pfam13516    pfam02758   
Domain families : Smart (EMBL)PYRIN (SM01289)  
Conserved Domain (NCBI)NLRP11
DMDM Disease mutations204801
Blocks (Seattle)NLRP11
SuperfamilyP59045
Human Protein AtlasENSG00000179873
Peptide AtlasP59045
HPRD10110
IPIIPI00168280   IPI00221085   IPI00643777   
Protein Interaction databases
DIP (DOE-UCLA)P59045
IntAct (EBI)P59045
FunCoupENSG00000179873
BioGRIDNLRP11
STRING (EMBL)NLRP11
ZODIACNLRP11
Ontologies - Pathways
QuickGOP59045
Ontology : AmiGORNA binding  ATP binding  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen  oxidation-reduction process  
Ontology : EGO-EBIRNA binding  ATP binding  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen  oxidation-reduction process  
NDEx NetworkNLRP11
Atlas of Cancer Signalling NetworkNLRP11
Wikipedia pathwaysNLRP11
Orthology - Evolution
OrthoDB204801
GeneTree (enSembl)ENSG00000179873
Phylogenetic Trees/Animal Genes : TreeFamNLRP11
HOVERGENP59045
HOGENOMP59045
Homologs : HomoloGeneNLRP11
Homology/Alignments : Family Browser (UCSC)NLRP11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNLRP11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NLRP11
dbVarNLRP11
ClinVarNLRP11
1000_GenomesNLRP11 
Exome Variant ServerNLRP11
ExAC (Exome Aggregation Consortium)NLRP11 (select the gene name)
Genetic variants : HAPMAP204801
Genomic Variants (DGV)NLRP11 [DGVbeta]
DECIPHERNLRP11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNLRP11 
Mutations
ICGC Data PortalNLRP11 
TCGA Data PortalNLRP11 
Broad Tumor PortalNLRP11
OASIS PortalNLRP11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNLRP11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNLRP11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NLRP11
DgiDB (Drug Gene Interaction Database)NLRP11
DoCM (Curated mutations)NLRP11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NLRP11 (select a term)
intoGenNLRP11
Cancer3DNLRP11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609664   
Orphanet
MedgenNLRP11
Genetic Testing Registry NLRP11
NextProtP59045 [Medical]
TSGene204801
GENETestsNLRP11
Target ValidationNLRP11
Huge Navigator NLRP11 [HugePedia]
snp3D : Map Gene to Disease204801
BioCentury BCIQNLRP11
ClinGenNLRP11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD204801
Chemical/Pharm GKB GenePA162397841
Clinical trialNLRP11
Miscellaneous
canSAR (ICR)NLRP11 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNLRP11
EVEXNLRP11
GoPubMedNLRP11
iHOPNLRP11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:46 CEST 2017

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