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NLRP13 (NLR family pyrin domain containing 13)

Identity

Alias_namesNALP13
NACHT, leucine rich repeat and PYD containing 13
Alias_symbol (synonym)NOD14
PAN13
CLR19.7
Other alias
HGNC (Hugo) NLRP13
LocusID (NCBI) 126204
Atlas_Id 70874
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 55891695 and ends at 55932336 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NLRP13   22937
Cards
Entrez_Gene (NCBI)NLRP13  126204  NLR family pyrin domain containing 13
AliasesCLR19.7; NALP13; NOD14; PAN13
GeneCards (Weizmann)NLRP13
Ensembl hg19 (Hinxton)ENSG00000173572 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173572 [Gene_View]  chr19:55891695-55932336 [Contig_View]  NLRP13 [Vega]
ICGC DataPortalENSG00000173572
TCGA cBioPortalNLRP13
AceView (NCBI)NLRP13
Genatlas (Paris)NLRP13
WikiGenes126204
SOURCE (Princeton)NLRP13
Genetics Home Reference (NIH)NLRP13
Genomic and cartography
GoldenPath hg38 (UCSC)NLRP13  -     chr19:55891695-55932336 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NLRP13  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblNLRP13 - 19q13.43 [CytoView hg19]  NLRP13 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBINLRP13 [Mapview hg19]  NLRP13 [Mapview hg38]
OMIM609660   
Gene and transcription
Genbank (Entrez)AY154468 BC146295 BC148742 BK001108
RefSeq transcript (Entrez)NM_001321057 NM_176810
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NLRP13
Cluster EST : UnigeneHs.446924 [ NCBI ]
CGAP (NCI)Hs.446924
Alternative Splicing GalleryENSG00000173572
Gene ExpressionNLRP13 [ NCBI-GEO ]   NLRP13 [ EBI - ARRAY_EXPRESS ]   NLRP13 [ SEEK ]   NLRP13 [ MEM ]
Gene Expression Viewer (FireBrowse)NLRP13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126204
GTEX Portal (Tissue expression)NLRP13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86W25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86W25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86W25
Splice isoforms : SwissVarQ86W25
PhosPhoSitePlusQ86W25
Domaine pattern : Prosite (Expaxy)DAPIN (PS50824)    NACHT (PS50837)   
Domains : Interpro (EBI)DAPIN    DEATH-like_dom    L_dom-like    Leu-rich_rpt    NACHT_NTPase    P-loop_NTPase   
Domain families : Pfam (Sanger)LRR_6 (PF13516)    PYRIN (PF02758)   
Domain families : Pfam (NCBI)pfam13516    pfam02758   
Domain families : Smart (EMBL)PYRIN (SM01289)  
Conserved Domain (NCBI)NLRP13
DMDM Disease mutations126204
Blocks (Seattle)NLRP13
SuperfamilyQ86W25
Human Protein AtlasENSG00000173572
Peptide AtlasQ86W25
HPRD14804
IPIIPI00249591   
Protein Interaction databases
DIP (DOE-UCLA)Q86W25
IntAct (EBI)Q86W25
FunCoupENSG00000173572
BioGRIDNLRP13
STRING (EMBL)NLRP13
ZODIACNLRP13
Ontologies - Pathways
QuickGOQ86W25
Ontology : AmiGOATP binding  
Ontology : EGO-EBIATP binding  
NDEx NetworkNLRP13
Atlas of Cancer Signalling NetworkNLRP13
Wikipedia pathwaysNLRP13
Orthology - Evolution
OrthoDB126204
GeneTree (enSembl)ENSG00000173572
Phylogenetic Trees/Animal Genes : TreeFamNLRP13
HOVERGENQ86W25
HOGENOMQ86W25
Homologs : HomoloGeneNLRP13
Homology/Alignments : Family Browser (UCSC)NLRP13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNLRP13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NLRP13
dbVarNLRP13
ClinVarNLRP13
1000_GenomesNLRP13 
Exome Variant ServerNLRP13
ExAC (Exome Aggregation Consortium)NLRP13 (select the gene name)
Genetic variants : HAPMAP126204
Genomic Variants (DGV)NLRP13 [DGVbeta]
DECIPHERNLRP13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNLRP13 
Mutations
ICGC Data PortalNLRP13 
TCGA Data PortalNLRP13 
Broad Tumor PortalNLRP13
OASIS PortalNLRP13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNLRP13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNLRP13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NLRP13
DgiDB (Drug Gene Interaction Database)NLRP13
DoCM (Curated mutations)NLRP13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NLRP13 (select a term)
intoGenNLRP13
Cancer3DNLRP13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609660   
Orphanet
MedgenNLRP13
Genetic Testing Registry NLRP13
NextProtQ86W25 [Medical]
TSGene126204
GENETestsNLRP13
Target ValidationNLRP13
Huge Navigator NLRP13 [HugePedia]
snp3D : Map Gene to Disease126204
BioCentury BCIQNLRP13
ClinGenNLRP13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126204
Chemical/Pharm GKB GenePA162397891
Clinical trialNLRP13
Miscellaneous
canSAR (ICR)NLRP13 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNLRP13
EVEXNLRP13
GoPubMedNLRP13
iHOPNLRP13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:06 CEST 2017

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