Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NLRP9 (NLR family pyrin domain containing 9)

Identity

Alias_namesNALP9
NACHT, leucine rich repeat and PYD containing 9
Alias_symbol (synonym)NOD6
PAN12
CLR19.1
Other alias
HGNC (Hugo) NLRP9
LocusID (NCBI) 338321
Atlas_Id 70880
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55708432 and ends at 55738402 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDH4 (20q13.33) / NLRP9 (19q13.42)RDH13 (19q13.42) / NLRP9 (19q13.42)U2AF2 (19q13.42) / NLRP9 (19q13.42)
RDH13 NLRP9CDH4 NLRP9U2AF2 NLRP9

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NLRP9   22941
Cards
Entrez_Gene (NCBI)NLRP9  338321  NLR family pyrin domain containing 9
AliasesCLR19.1; NALP9; NOD6; PAN12
GeneCards (Weizmann)NLRP9
Ensembl hg19 (Hinxton)ENSG00000185792 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185792 [Gene_View]  chr19:55708432-55738402 [Contig_View]  NLRP9 [Vega]
ICGC DataPortalENSG00000185792
TCGA cBioPortalNLRP9
AceView (NCBI)NLRP9
Genatlas (Paris)NLRP9
WikiGenes338321
SOURCE (Princeton)NLRP9
Genetics Home Reference (NIH)NLRP9
Genomic and cartography
GoldenPath hg38 (UCSC)NLRP9  -     chr19:55708432-55738402 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NLRP9  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblNLRP9 - 19q13.42 [CytoView hg19]  NLRP9 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBINLRP9 [Mapview hg19]  NLRP9 [Mapview hg38]
OMIM609663   
Gene and transcription
Genbank (Entrez)AY154464 BC136583 BK001114
RefSeq transcript (Entrez)NM_176820
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NLRP9
Cluster EST : UnigeneHs.661568 [ NCBI ]
CGAP (NCI)Hs.661568
Alternative Splicing GalleryENSG00000185792
Gene ExpressionNLRP9 [ NCBI-GEO ]   NLRP9 [ EBI - ARRAY_EXPRESS ]   NLRP9 [ SEEK ]   NLRP9 [ MEM ]
Gene Expression Viewer (FireBrowse)NLRP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338321
GTEX Portal (Tissue expression)NLRP9
Human Protein AtlasENSG00000185792-NLRP9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTR0
Splice isoforms : SwissVarQ7RTR0
PhosPhoSitePlusQ7RTR0
Domaine pattern : Prosite (Expaxy)DAPIN (PS50824)    NACHT (PS50837)   
Domains : Interpro (EBI)DAPIN    DEATH-like_dom    L_dom-like    Leu-rich_rpt    NACHT_NTPase    P-loop_NTPase   
Domain families : Pfam (Sanger)LRR_6 (PF13516)    PYRIN (PF02758)   
Domain families : Pfam (NCBI)pfam13516    pfam02758   
Domain families : Smart (EMBL)PYRIN (SM01289)  
Conserved Domain (NCBI)NLRP9
DMDM Disease mutations338321
Blocks (Seattle)NLRP9
SuperfamilyQ7RTR0
Human Protein Atlas [tissue]ENSG00000185792-NLRP9 [tissue]
Peptide AtlasQ7RTR0
HPRD14808
IPIIPI00337644   IPI00328972   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTR0
IntAct (EBI)Q7RTR0
FunCoupENSG00000185792
BioGRIDNLRP9
STRING (EMBL)NLRP9
ZODIACNLRP9
Ontologies - Pathways
QuickGOQ7RTR0
Ontology : AmiGOATP binding  cytoplasm  
Ontology : EGO-EBIATP binding  cytoplasm  
NDEx NetworkNLRP9
Atlas of Cancer Signalling NetworkNLRP9
Wikipedia pathwaysNLRP9
Orthology - Evolution
OrthoDB338321
GeneTree (enSembl)ENSG00000185792
Phylogenetic Trees/Animal Genes : TreeFamNLRP9
HOVERGENQ7RTR0
HOGENOMQ7RTR0
Homologs : HomoloGeneNLRP9
Homology/Alignments : Family Browser (UCSC)NLRP9
Gene fusions - Rearrangements
Fusion: TCGA_MDACCRDH13 NLRP9
Fusion: TCGA_MDACCCDH4 NLRP9
Fusion: TCGA_MDACCU2AF2 NLRP9
Tumor Fusion PortalNLRP9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNLRP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NLRP9
dbVarNLRP9
ClinVarNLRP9
1000_GenomesNLRP9 
Exome Variant ServerNLRP9
ExAC (Exome Aggregation Consortium)ENSG00000185792
GNOMAD BrowserENSG00000185792
Genetic variants : HAPMAP338321
Genomic Variants (DGV)NLRP9 [DGVbeta]
DECIPHERNLRP9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNLRP9 
Mutations
ICGC Data PortalNLRP9 
TCGA Data PortalNLRP9 
Broad Tumor PortalNLRP9
OASIS PortalNLRP9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNLRP9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNLRP9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NLRP9
DgiDB (Drug Gene Interaction Database)NLRP9
DoCM (Curated mutations)NLRP9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NLRP9 (select a term)
intoGenNLRP9
Cancer3DNLRP9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609663   
Orphanet
DisGeNETNLRP9
MedgenNLRP9
Genetic Testing Registry NLRP9
NextProtQ7RTR0 [Medical]
TSGene338321
GENETestsNLRP9
Target ValidationNLRP9
Huge Navigator NLRP9 [HugePedia]
snp3D : Map Gene to Disease338321
BioCentury BCIQNLRP9
ClinGenNLRP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338321
Chemical/Pharm GKB GenePA162398029
Clinical trialNLRP9
Miscellaneous
canSAR (ICR)NLRP9 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNLRP9
EVEXNLRP9
GoPubMedNLRP9
iHOPNLRP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:39:27 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.