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NMD3 (NMD3 ribosome export adaptor)

Identity

Alias_namesNMD3 homolog (S. cerevisiae)
Alias_symbol (synonym)CGI-07
Other alias
HGNC (Hugo) NMD3
LocusID (NCBI) 51068
Atlas_Id 70884
Location 3q26.1  [Link to chromosome band 3q26]
Location_base_pair Starts at 161221290 and ends at 161253532 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LAPTM4A (2p24.1) / NMD3 (3q26.1)MTRR (5p15.31) / NMD3 (3q26.1)NMD3 (3q26.1) / NMD3 (3q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NMD3   24250
Cards
Entrez_Gene (NCBI)NMD3  51068  NMD3 ribosome export adaptor
AliasesCGI-07
GeneCards (Weizmann)NMD3
Ensembl hg19 (Hinxton)ENSG00000169251 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169251 [Gene_View]  chr3:161221290-161253532 [Contig_View]  NMD3 [Vega]
ICGC DataPortalENSG00000169251
TCGA cBioPortalNMD3
AceView (NCBI)NMD3
Genatlas (Paris)NMD3
WikiGenes51068
SOURCE (Princeton)NMD3
Genetics Home Reference (NIH)NMD3
Genomic and cartography
GoldenPath hg38 (UCSC)NMD3  -     chr3:161221290-161253532 +  3q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NMD3  -     3q26.1   [Description]    (hg19-Feb_2009)
EnsemblNMD3 - 3q26.1 [CytoView hg19]  NMD3 - 3q26.1 [CytoView hg38]
Mapping of homologs : NCBINMD3 [Mapview hg19]  NMD3 [Mapview hg38]
OMIM611021   
Gene and transcription
Genbank (Entrez)AF132941 AK021775 AK024706 AK094749 AK225664
RefSeq transcript (Entrez)NM_001320227 NM_015938
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NMD3
Cluster EST : UnigeneHs.598836 [ NCBI ]
CGAP (NCI)Hs.598836
Alternative Splicing GalleryENSG00000169251
Gene ExpressionNMD3 [ NCBI-GEO ]   NMD3 [ EBI - ARRAY_EXPRESS ]   NMD3 [ SEEK ]   NMD3 [ MEM ]
Gene Expression Viewer (FireBrowse)NMD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51068
GTEX Portal (Tissue expression)NMD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96D46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96D46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96D46
Splice isoforms : SwissVarQ96D46
PhosPhoSitePlusQ96D46
Domains : Interpro (EBI)NMD3   
Domain families : Pfam (Sanger)NMD3 (PF04981)   
Domain families : Pfam (NCBI)pfam04981   
Conserved Domain (NCBI)NMD3
DMDM Disease mutations51068
Blocks (Seattle)NMD3
SuperfamilyQ96D46
Human Protein AtlasENSG00000169251
Peptide AtlasQ96D46
HPRD13026
IPIIPI00790937   IPI00797406   IPI00101049   IPI00946187   IPI00796150   IPI00794858   
Protein Interaction databases
DIP (DOE-UCLA)Q96D46
IntAct (EBI)Q96D46
FunCoupENSG00000169251
BioGRIDNMD3
STRING (EMBL)NMD3
ZODIACNMD3
Ontologies - Pathways
QuickGOQ96D46
Ontology : AmiGOribosomal large subunit export from nucleus  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  membrane  protein binding, bridging  ribosomal large subunit binding  positive regulation of RNA biosynthetic process  positive regulation of protein localization to nucleolus  
Ontology : EGO-EBIribosomal large subunit export from nucleus  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  membrane  protein binding, bridging  ribosomal large subunit binding  positive regulation of RNA biosynthetic process  positive regulation of protein localization to nucleolus  
Pathways : KEGGRibosome biogenesis in eukaryotes    RNA transport   
NDEx NetworkNMD3
Atlas of Cancer Signalling NetworkNMD3
Wikipedia pathwaysNMD3
Orthology - Evolution
OrthoDB51068
GeneTree (enSembl)ENSG00000169251
Phylogenetic Trees/Animal Genes : TreeFamNMD3
HOVERGENQ96D46
HOGENOMQ96D46
Homologs : HomoloGeneNMD3
Homology/Alignments : Family Browser (UCSC)NMD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNMD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NMD3
dbVarNMD3
ClinVarNMD3
1000_GenomesNMD3 
Exome Variant ServerNMD3
ExAC (Exome Aggregation Consortium)NMD3 (select the gene name)
Genetic variants : HAPMAP51068
Genomic Variants (DGV)NMD3 [DGVbeta]
DECIPHERNMD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNMD3 
Mutations
ICGC Data PortalNMD3 
TCGA Data PortalNMD3 
Broad Tumor PortalNMD3
OASIS PortalNMD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNMD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNMD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NMD3
DgiDB (Drug Gene Interaction Database)NMD3
DoCM (Curated mutations)NMD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NMD3 (select a term)
intoGenNMD3
Cancer3DNMD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611021   
Orphanet
MedgenNMD3
Genetic Testing Registry NMD3
NextProtQ96D46 [Medical]
TSGene51068
GENETestsNMD3
Target ValidationNMD3
Huge Navigator NMD3 [HugePedia]
snp3D : Map Gene to Disease51068
BioCentury BCIQNMD3
ClinGenNMD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51068
Chemical/Pharm GKB GenePA134884140
Clinical trialNMD3
Miscellaneous
canSAR (ICR)NMD3 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNMD3
EVEXNMD3
GoPubMedNMD3
iHOPNMD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:07 CEST 2017

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