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NME5 (NME/NM23 family member 5)

Identity

Alias_namesnon-metastatic cells 5
Alias_symbol (synonym)nm23-H5
RSPH23
Other aliasNM23-H5
NM23H5
HGNC (Hugo) NME5
LocusID (NCBI) 8382
Atlas_Id 52826
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 138115172 and ends at 138139443 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NME5   7853
Cards
Entrez_Gene (NCBI)NME5  8382  NME/NM23 family member 5
AliasesNM23-H5; NM23H5; RSPH23
GeneCards (Weizmann)NME5
Ensembl hg19 (Hinxton)ENSG00000112981 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112981 [Gene_View]  chr5:138115172-138139443 [Contig_View]  NME5 [Vega]
ICGC DataPortalENSG00000112981
TCGA cBioPortalNME5
AceView (NCBI)NME5
Genatlas (Paris)NME5
WikiGenes8382
SOURCE (Princeton)NME5
Genetics Home Reference (NIH)NME5
Genomic and cartography
GoldenPath hg38 (UCSC)NME5  -     chr5:138115172-138139443 -  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NME5  -     5q31.2   [Description]    (hg19-Feb_2009)
EnsemblNME5 - 5q31.2 [CytoView hg19]  NME5 - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBINME5 [Mapview hg19]  NME5 [Mapview hg38]
OMIM603575   
Gene and transcription
Genbank (Entrez)AF067724 AK312181 BC026182 BM979998 BX490554
RefSeq transcript (Entrez)NM_003551
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NME5
Cluster EST : UnigeneHs.730856 [ NCBI ]
CGAP (NCI)Hs.730856
Alternative Splicing GalleryENSG00000112981
Gene ExpressionNME5 [ NCBI-GEO ]   NME5 [ EBI - ARRAY_EXPRESS ]   NME5 [ SEEK ]   NME5 [ MEM ]
Gene Expression Viewer (FireBrowse)NME5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8382
GTEX Portal (Tissue expression)NME5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56597   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56597  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56597
Splice isoforms : SwissVarP56597
PhosPhoSitePlusP56597
Domains : Interpro (EBI)Dpy-30_motif    NDK_H5    Nucleoside_diP_kinase   
Domain families : Pfam (Sanger)Dpy-30 (PF05186)    NDK (PF00334)   
Domain families : Pfam (NCBI)pfam05186    pfam00334   
Domain families : Smart (EMBL)NDK (SM00562)  
Conserved Domain (NCBI)NME5
DMDM Disease mutations8382
Blocks (Seattle)NME5
SuperfamilyP56597
Human Protein AtlasENSG00000112981
Peptide AtlasP56597
HPRD04655
IPIIPI00010261   
Protein Interaction databases
DIP (DOE-UCLA)P56597
IntAct (EBI)P56597
FunCoupENSG00000112981
BioGRIDNME5
STRING (EMBL)NME5
ZODIACNME5
Ontologies - Pathways
QuickGOP56597
Ontology : AmiGOepithelial cilium movement  nucleoside diphosphate kinase activity  protein binding  cellular_component  nucleoside diphosphate phosphorylation  GTP biosynthetic process  UTP biosynthetic process  CTP biosynthetic process  spermatogenesis  spermatid development  nucleoside metabolic process  ventricular system development  sperm flagellum  cilium assembly  negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway  
Ontology : EGO-EBIepithelial cilium movement  nucleoside diphosphate kinase activity  protein binding  cellular_component  nucleoside diphosphate phosphorylation  GTP biosynthetic process  UTP biosynthetic process  CTP biosynthetic process  spermatogenesis  spermatid development  nucleoside metabolic process  ventricular system development  sperm flagellum  cilium assembly  negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway  
Pathways : KEGGPurine metabolism    Pyrimidine metabolism   
NDEx NetworkNME5
Atlas of Cancer Signalling NetworkNME5
Wikipedia pathwaysNME5
Orthology - Evolution
OrthoDB8382
GeneTree (enSembl)ENSG00000112981
Phylogenetic Trees/Animal Genes : TreeFamNME5
HOVERGENP56597
HOGENOMP56597
Homologs : HomoloGeneNME5
Homology/Alignments : Family Browser (UCSC)NME5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNME5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NME5
dbVarNME5
ClinVarNME5
1000_GenomesNME5 
Exome Variant ServerNME5
ExAC (Exome Aggregation Consortium)NME5 (select the gene name)
Genetic variants : HAPMAP8382
Genomic Variants (DGV)NME5 [DGVbeta]
DECIPHERNME5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNME5 
Mutations
ICGC Data PortalNME5 
TCGA Data PortalNME5 
Broad Tumor PortalNME5
OASIS PortalNME5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNME5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNME5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NME5
DgiDB (Drug Gene Interaction Database)NME5
DoCM (Curated mutations)NME5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NME5 (select a term)
intoGenNME5
Cancer3DNME5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603575   
Orphanet
MedgenNME5
Genetic Testing Registry NME5
NextProtP56597 [Medical]
TSGene8382
GENETestsNME5
Target ValidationNME5
Huge Navigator NME5 [HugePedia]
snp3D : Map Gene to Disease8382
BioCentury BCIQNME5
ClinGenNME5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8382
Chemical/Pharm GKB GenePA31658
Clinical trialNME5
Miscellaneous
canSAR (ICR)NME5 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNME5
EVEXNME5
GoPubMedNME5
iHOPNME5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:47:00 CEST 2017

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