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NME9 (NME/NM23 family member 9)

Identity

Alias_namesTXNDC6
thioredoxin domain containing 6
NME gene family member 9
NME family member 9
Alias_symbol (synonym)TXL-2
NM23-H9
Other aliasTXL2
HGNC (Hugo) NME9
LocusID (NCBI) 347736
Atlas_Id 53822
Location 3q22.3  [Link to chromosome band 3q22]
Location_base_pair Starts at 138301004 and ends at 138329886 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZBTB25 (14q23.3) / NME9 (3q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NME9   21343
Cards
Entrez_Gene (NCBI)NME9  347736  NME/NM23 family member 9
AliasesNM23-H9; TXL-2; TXL2; TXNDC6
GeneCards (Weizmann)NME9
Ensembl hg19 (Hinxton)ENSG00000181322 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181322 [Gene_View]  chr3:138301004-138329886 [Contig_View]  NME9 [Vega]
ICGC DataPortalENSG00000181322
TCGA cBioPortalNME9
AceView (NCBI)NME9
Genatlas (Paris)NME9
WikiGenes347736
SOURCE (Princeton)NME9
Genetics Home Reference (NIH)NME9
Genomic and cartography
GoldenPath hg38 (UCSC)NME9  -     chr3:138301004-138329886 -  3q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NME9  -     3q22.3   [Description]    (hg19-Feb_2009)
EnsemblNME9 - 3q22.3 [CytoView hg19]  NME9 - 3q22.3 [CytoView hg38]
Mapping of homologs : NCBINME9 [Mapview hg19]  NME9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF196568 AK094830 AY336746 BC107054
RefSeq transcript (Entrez)NM_001349018 NM_001349020 NM_001349021 NM_001349022 NM_001349023 NM_001349024 NM_001349025 NM_178130
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NME9
Cluster EST : UnigeneHs.660992 [ NCBI ]
CGAP (NCI)Hs.660992
Alternative Splicing GalleryENSG00000181322
Gene ExpressionNME9 [ NCBI-GEO ]   NME9 [ EBI - ARRAY_EXPRESS ]   NME9 [ SEEK ]   NME9 [ MEM ]
Gene Expression Viewer (FireBrowse)NME9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347736
GTEX Portal (Tissue expression)NME9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XW9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XW9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XW9
Splice isoforms : SwissVarQ86XW9
PhosPhoSitePlusQ86XW9
Domaine pattern : Prosite (Expaxy)THIOREDOXIN_1 (PS00194)   
Domains : Interpro (EBI)Nucleoside_diP_kinase    Thioredoxin-like_fold    Thioredoxin_CS    Thioredoxin_domain   
Domain families : Pfam (Sanger)NDK (PF00334)    Thioredoxin (PF00085)   
Domain families : Pfam (NCBI)pfam00334    pfam00085   
Domain families : Smart (EMBL)NDK (SM00562)  
Conserved Domain (NCBI)NME9
DMDM Disease mutations347736
Blocks (Seattle)NME9
SuperfamilyQ86XW9
Human Protein AtlasENSG00000181322
Peptide AtlasQ86XW9
HPRD18250
IPIIPI00384617   IPI00166292   IPI00414608   IPI00654782   IPI00946796   IPI00793347   IPI00977147   IPI00946959   
Protein Interaction databases
DIP (DOE-UCLA)Q86XW9
IntAct (EBI)Q86XW9
FunCoupENSG00000181322
BioGRIDNME9
STRING (EMBL)NME9
ZODIACNME9
Ontologies - Pathways
QuickGOQ86XW9
Ontology : AmiGOnucleoside diphosphate kinase activity  cytoplasm  cytoskeleton  nucleoside diphosphate phosphorylation  GTP biosynthetic process  UTP biosynthetic process  CTP biosynthetic process  cell redox homeostasis  
Ontology : EGO-EBInucleoside diphosphate kinase activity  cytoplasm  cytoskeleton  nucleoside diphosphate phosphorylation  GTP biosynthetic process  UTP biosynthetic process  CTP biosynthetic process  cell redox homeostasis  
NDEx NetworkNME9
Atlas of Cancer Signalling NetworkNME9
Wikipedia pathwaysNME9
Orthology - Evolution
OrthoDB347736
GeneTree (enSembl)ENSG00000181322
Phylogenetic Trees/Animal Genes : TreeFamNME9
HOVERGENQ86XW9
HOGENOMQ86XW9
Homologs : HomoloGeneNME9
Homology/Alignments : Family Browser (UCSC)NME9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNME9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NME9
dbVarNME9
ClinVarNME9
1000_GenomesNME9 
Exome Variant ServerNME9
ExAC (Exome Aggregation Consortium)NME9 (select the gene name)
Genetic variants : HAPMAP347736
Genomic Variants (DGV)NME9 [DGVbeta]
DECIPHERNME9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNME9 
Mutations
ICGC Data PortalNME9 
TCGA Data PortalNME9 
Broad Tumor PortalNME9
OASIS PortalNME9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNME9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNME9
BioMutasearch NME9
DgiDB (Drug Gene Interaction Database)NME9
DoCM (Curated mutations)NME9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NME9 (select a term)
intoGenNME9
Cancer3DNME9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNME9
Genetic Testing Registry NME9
NextProtQ86XW9 [Medical]
TSGene347736
GENETestsNME9
Huge Navigator NME9 [HugePedia]
snp3D : Map Gene to Disease347736
BioCentury BCIQNME9
ClinGenNME9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347736
Chemical/Pharm GKB GenePA134909407
Clinical trialNME9
Miscellaneous
canSAR (ICR)NME9 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNME9
EVEXNME9
GoPubMedNME9
iHOPNME9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:28:50 CEST 2017

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