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NMI (N-myc and STAT interactor)

Identity

Alias_namesN-myc (and STAT) interactor
Other alias-
HGNC (Hugo) NMI
LocusID (NCBI) 9111
Atlas_Id 41549
Location 2q23.3  [Link to chromosome band 2q23]
Location_base_pair Starts at 151270468 and ends at 151289916 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IFITM2 (11p15.5) / NMI (2q23.3)PPHLN1 (12q12) / NMI (2q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NMI   7854
Cards
Entrez_Gene (NCBI)NMI  9111  N-myc and STAT interactor
Aliases
GeneCards (Weizmann)NMI
Ensembl hg19 (Hinxton)ENSG00000123609 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123609 [Gene_View]  chr2:151270468-151289916 [Contig_View]  NMI [Vega]
ICGC DataPortalENSG00000123609
TCGA cBioPortalNMI
AceView (NCBI)NMI
Genatlas (Paris)NMI
WikiGenes9111
SOURCE (Princeton)NMI
Genetics Home Reference (NIH)NMI
Genomic and cartography
GoldenPath hg38 (UCSC)NMI  -     chr2:151270468-151289916 -  2q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NMI  -     2q23.3   [Description]    (hg19-Feb_2009)
EnsemblNMI - 2q23.3 [CytoView hg19]  NMI - 2q23.3 [CytoView hg38]
Mapping of homologs : NCBINMI [Mapview hg19]  NMI [Mapview hg38]
OMIM603525   
Gene and transcription
Genbank (Entrez)AB451305 AB451436 AK124323 AK291548 AK298754
RefSeq transcript (Entrez)NM_004688
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NMI
Cluster EST : UnigeneHs.54483 [ NCBI ]
CGAP (NCI)Hs.54483
Alternative Splicing GalleryENSG00000123609
Gene ExpressionNMI [ NCBI-GEO ]   NMI [ EBI - ARRAY_EXPRESS ]   NMI [ SEEK ]   NMI [ MEM ]
Gene Expression Viewer (FireBrowse)NMI [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9111
GTEX Portal (Tissue expression)NMI
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13287   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13287  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13287
Splice isoforms : SwissVarQ13287
PhosPhoSitePlusQ13287
Domains : Interpro (EBI)NMI    Nmi/IFP35_dom    Nmi/IFP35_N   
Domain families : Pfam (Sanger)IFP_35_N (PF07334)    NID (PF07292)   
Domain families : Pfam (NCBI)pfam07334    pfam07292   
Conserved Domain (NCBI)NMI
DMDM Disease mutations9111
Blocks (Seattle)NMI
SuperfamilyQ13287
Human Protein AtlasENSG00000123609
Peptide AtlasQ13287
HPRD04632
IPIIPI00012450   IPI00917177   
Protein Interaction databases
DIP (DOE-UCLA)Q13287
IntAct (EBI)Q13287
FunCoupENSG00000123609
BioGRIDNMI
STRING (EMBL)NMI
ZODIACNMI
Ontologies - Pathways
QuickGOQ13287
Ontology : AmiGOtranscription cofactor activity  protein binding  nucleoplasm  cytoplasm  cytosol  transcription from RNA polymerase II promoter  inflammatory response  JAK-STAT cascade  identical protein binding  negative regulation of interferon-alpha biosynthetic process  negative regulation of interferon-beta biosynthetic process  negative regulation of innate immune response  interferon-gamma-mediated signaling pathway  positive regulation of protein K48-linked ubiquitination  regulation of nucleic acid-templated transcription  
Ontology : EGO-EBItranscription cofactor activity  protein binding  nucleoplasm  cytoplasm  cytosol  transcription from RNA polymerase II promoter  inflammatory response  JAK-STAT cascade  identical protein binding  negative regulation of interferon-alpha biosynthetic process  negative regulation of interferon-beta biosynthetic process  negative regulation of innate immune response  interferon-gamma-mediated signaling pathway  positive regulation of protein K48-linked ubiquitination  regulation of nucleic acid-templated transcription  
Pathways : BIOCARTAIL-7 Signal Transduction [Genes]    IL-2 Receptor Beta Chain in T cell Activation [Genes]   
NDEx NetworkNMI
Atlas of Cancer Signalling NetworkNMI
Wikipedia pathwaysNMI
Orthology - Evolution
OrthoDB9111
GeneTree (enSembl)ENSG00000123609
Phylogenetic Trees/Animal Genes : TreeFamNMI
HOVERGENQ13287
HOGENOMQ13287
Homologs : HomoloGeneNMI
Homology/Alignments : Family Browser (UCSC)NMI
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNMI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NMI
dbVarNMI
ClinVarNMI
1000_GenomesNMI 
Exome Variant ServerNMI
ExAC (Exome Aggregation Consortium)NMI (select the gene name)
Genetic variants : HAPMAP9111
Genomic Variants (DGV)NMI [DGVbeta]
DECIPHERNMI [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNMI 
Mutations
ICGC Data PortalNMI 
TCGA Data PortalNMI 
Broad Tumor PortalNMI
OASIS PortalNMI [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNMI  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNMI
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NMI
DgiDB (Drug Gene Interaction Database)NMI
DoCM (Curated mutations)NMI (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NMI (select a term)
intoGenNMI
Cancer3DNMI(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603525   
Orphanet
MedgenNMI
Genetic Testing Registry NMI
NextProtQ13287 [Medical]
TSGene9111
GENETestsNMI
Huge Navigator NMI [HugePedia]
snp3D : Map Gene to Disease9111
BioCentury BCIQNMI
ClinGenNMI
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9111
Chemical/Pharm GKB GenePA31659
Clinical trialNMI
Miscellaneous
canSAR (ICR)NMI (select the gene name)
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNMI
EVEXNMI
GoPubMedNMI
iHOPNMI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:28:50 CEST 2017

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