Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NMS (neuromedin S)

Identity

Other alias-
HGNC (Hugo) NMS
LocusID (NCBI) 129521
Atlas_Id 70889
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 100470482 and ends at 100483280 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NMS   32203
Cards
Entrez_Gene (NCBI)NMS  129521  neuromedin S
Aliases
GeneCards (Weizmann)NMS
Ensembl hg19 (Hinxton)ENSG00000204640 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204640 [Gene_View]  chr2:100470482-100483280 [Contig_View]  NMS [Vega]
ICGC DataPortalENSG00000204640
TCGA cBioPortalNMS
AceView (NCBI)NMS
Genatlas (Paris)NMS
WikiGenes129521
SOURCE (Princeton)NMS
Genetics Home Reference (NIH)NMS
Genomic and cartography
GoldenPath hg38 (UCSC)NMS  -     chr2:100470482-100483280 +  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NMS  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblNMS - 2q11.2 [CytoView hg19]  NMS - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBINMS [Mapview hg19]  NMS [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB164464 BC148626 BC153190
RefSeq transcript (Entrez)NM_001011717
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NMS
Cluster EST : UnigeneHs.567676 [ NCBI ]
CGAP (NCI)Hs.567676
Alternative Splicing GalleryENSG00000204640
Gene ExpressionNMS [ NCBI-GEO ]   NMS [ EBI - ARRAY_EXPRESS ]   NMS [ SEEK ]   NMS [ MEM ]
Gene Expression Viewer (FireBrowse)NMS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129521
GTEX Portal (Tissue expression)NMS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H8A3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H8A3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H8A3
Splice isoforms : SwissVarQ5H8A3
PhosPhoSitePlusQ5H8A3
Domaine pattern : Prosite (Expaxy)NMU (PS00967)   
Domains : Interpro (EBI)Neuromedin-U_amidation-site   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NMS
DMDM Disease mutations129521
Blocks (Seattle)NMS
SuperfamilyQ5H8A3
Human Protein AtlasENSG00000204640
Peptide AtlasQ5H8A3
HPRD17638
IPIIPI00552964   
Protein Interaction databases
DIP (DOE-UCLA)Q5H8A3
IntAct (EBI)Q5H8A3
FunCoupENSG00000204640
BioGRIDNMS
STRING (EMBL)NMS
ZODIACNMS
Ontologies - Pathways
QuickGOQ5H8A3
Ontology : AmiGOG-protein coupled receptor binding  extracellular region  neuropeptide signaling pathway  locomotor rhythm  
Ontology : EGO-EBIG-protein coupled receptor binding  extracellular region  neuropeptide signaling pathway  locomotor rhythm  
NDEx NetworkNMS
Atlas of Cancer Signalling NetworkNMS
Wikipedia pathwaysNMS
Orthology - Evolution
OrthoDB129521
GeneTree (enSembl)ENSG00000204640
Phylogenetic Trees/Animal Genes : TreeFamNMS
HOVERGENQ5H8A3
HOGENOMQ5H8A3
Homologs : HomoloGeneNMS
Homology/Alignments : Family Browser (UCSC)NMS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNMS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NMS
dbVarNMS
ClinVarNMS
1000_GenomesNMS 
Exome Variant ServerNMS
ExAC (Exome Aggregation Consortium)NMS (select the gene name)
Genetic variants : HAPMAP129521
Genomic Variants (DGV)NMS [DGVbeta]
DECIPHERNMS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNMS 
Mutations
ICGC Data PortalNMS 
TCGA Data PortalNMS 
Broad Tumor PortalNMS
OASIS PortalNMS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNMS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNMS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NMS
DgiDB (Drug Gene Interaction Database)NMS
DoCM (Curated mutations)NMS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NMS (select a term)
intoGenNMS
Cancer3DNMS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNMS
Genetic Testing Registry NMS
NextProtQ5H8A3 [Medical]
TSGene129521
GENETestsNMS
Target ValidationNMS
Huge Navigator NMS [HugePedia]
snp3D : Map Gene to Disease129521
BioCentury BCIQNMS
ClinGenNMS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129521
Chemical/Pharm GKB GenePA142671260
Clinical trialNMS
Miscellaneous
canSAR (ICR)NMS (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNMS
EVEXNMS
GoPubMedNMS
iHOPNMS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:08 CEST 2017

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