Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NOB1 (NIN1/PSMD8 binding protein 1 homolog)

Identity

Alias_namesPSMD8BP1
PSMD8 binding protein 1
NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)
NIN1/RPN12 binding protein 1 homolog
Alias_symbol (synonym)NOB1P
ART-4
MST158
Other aliasMSTP158
HGNC (Hugo) NOB1
LocusID (NCBI) 28987
Atlas_Id 52654
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 69741854 and ends at 69754968 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NOB1 (16q22.1) / OXNAD1 (3p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOB1   29540
Cards
Entrez_Gene (NCBI)NOB1  28987  NIN1/PSMD8 binding protein 1 homolog
AliasesART-4; MST158; MSTP158; NOB1P; 
PSMD8BP1
GeneCards (Weizmann)NOB1
Ensembl hg19 (Hinxton)ENSG00000141101 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141101 [Gene_View]  chr16:69741854-69754968 [Contig_View]  NOB1 [Vega]
ICGC DataPortalENSG00000141101
TCGA cBioPortalNOB1
AceView (NCBI)NOB1
Genatlas (Paris)NOB1
WikiGenes28987
SOURCE (Princeton)NOB1
Genetics Home Reference (NIH)NOB1
Genomic and cartography
GoldenPath hg38 (UCSC)NOB1  -     chr16:69741854-69754968 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOB1  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblNOB1 - 16q22.1 [CytoView hg19]  NOB1 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBINOB1 [Mapview hg19]  NOB1 [Mapview hg38]
OMIM613586   
Gene and transcription
Genbank (Entrez)AB026125 AF190161 AK001028 AK126196 AK314307
RefSeq transcript (Entrez)NM_014062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOB1
Cluster EST : UnigeneHs.271695 [ NCBI ]
CGAP (NCI)Hs.271695
Alternative Splicing GalleryENSG00000141101
Gene ExpressionNOB1 [ NCBI-GEO ]   NOB1 [ EBI - ARRAY_EXPRESS ]   NOB1 [ SEEK ]   NOB1 [ MEM ]
Gene Expression Viewer (FireBrowse)NOB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28987
GTEX Portal (Tissue expression)NOB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULX3
Splice isoforms : SwissVarQ9ULX3
PhosPhoSitePlusQ9ULX3
Domains : Interpro (EBI)NOB1_Zn-bd    PIN_dom    Ribonuclease_PIN    WRNPLPNID   
Domain families : Pfam (Sanger)NOB1_Zn_bind (PF08772)    PIN_6 (PF17146)    WRNPLPNID (PF15017)   
Domain families : Pfam (NCBI)pfam08772    pfam17146    pfam15017   
Domain families : Smart (EMBL)PINc (SM00670)  
Conserved Domain (NCBI)NOB1
DMDM Disease mutations28987
Blocks (Seattle)NOB1
SuperfamilyQ9ULX3
Human Protein AtlasENSG00000141101
Peptide AtlasQ9ULX3
HPRD11395
IPIIPI00022373   IPI00985336   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULX3
IntAct (EBI)Q9ULX3
FunCoupENSG00000141101
BioGRIDNOB1
STRING (EMBL)NOB1
ZODIACNOB1
Ontologies - Pathways
QuickGOQ9ULX3
Ontology : AmiGOcleavage involved in rRNA processing  endoribonuclease activity  endoribonuclease activity  nucleoplasm  cytosol  rRNA processing  visual perception  maturation of SSU-rRNA  preribosome, small subunit precursor  metal ion binding  RNA phosphodiester bond hydrolysis, endonucleolytic  
Ontology : EGO-EBIcleavage involved in rRNA processing  endoribonuclease activity  endoribonuclease activity  nucleoplasm  cytosol  rRNA processing  visual perception  maturation of SSU-rRNA  preribosome, small subunit precursor  metal ion binding  RNA phosphodiester bond hydrolysis, endonucleolytic  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkNOB1
Atlas of Cancer Signalling NetworkNOB1
Wikipedia pathwaysNOB1
Orthology - Evolution
OrthoDB28987
GeneTree (enSembl)ENSG00000141101
Phylogenetic Trees/Animal Genes : TreeFamNOB1
HOVERGENQ9ULX3
HOGENOMQ9ULX3
Homologs : HomoloGeneNOB1
Homology/Alignments : Family Browser (UCSC)NOB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOB1
dbVarNOB1
ClinVarNOB1
1000_GenomesNOB1 
Exome Variant ServerNOB1
ExAC (Exome Aggregation Consortium)NOB1 (select the gene name)
Genetic variants : HAPMAP28987
Genomic Variants (DGV)NOB1 [DGVbeta]
DECIPHERNOB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOB1 
Mutations
ICGC Data PortalNOB1 
TCGA Data PortalNOB1 
Broad Tumor PortalNOB1
OASIS PortalNOB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOB1
DgiDB (Drug Gene Interaction Database)NOB1
DoCM (Curated mutations)NOB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOB1 (select a term)
intoGenNOB1
Cancer3DNOB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613586   
Orphanet
MedgenNOB1
Genetic Testing Registry NOB1
NextProtQ9ULX3 [Medical]
TSGene28987
GENETestsNOB1
Target ValidationNOB1
Huge Navigator NOB1 [HugePedia]
snp3D : Map Gene to Disease28987
BioCentury BCIQNOB1
ClinGenNOB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28987
Chemical/Pharm GKB GenePA143485585
Clinical trialNOB1
Miscellaneous
canSAR (ICR)NOB1 (select the gene name)
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOB1
EVEXNOB1
GoPubMedNOB1
iHOPNOB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:47:03 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.