Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NOBOX (NOBOX oogenesis homeobox)

Identity

Alias (NCBI)OG-2
OG2
OG2X
POF5
TCAG_12042
HGNC (Hugo) NOBOX
HGNC Alias symbOG2
Og2x
HGNC Alias namenewborn ovary homeobox-encoding gene
LocusID (NCBI) 135935
Atlas_Id 70894
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 144397240 and ends at 144410227 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NOBOX   22448
Cards
Entrez_Gene (NCBI)NOBOX    NOBOX oogenesis homeobox
AliasesOG-2; OG2; OG2X; POF5; 
TCAG_12042
GeneCards (Weizmann)NOBOX
Ensembl hg19 (Hinxton)ENSG00000106410 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106410 [Gene_View]  ENSG00000106410 [Sequence]  chr7:144397240-144410227 [Contig_View]  NOBOX [Vega]
ICGC DataPortalENSG00000106410
TCGA cBioPortalNOBOX
AceView (NCBI)NOBOX
Genatlas (Paris)NOBOX
SOURCE (Princeton)NOBOX
Genetics Home Reference (NIH)NOBOX
Genomic and cartography
GoldenPath hg38 (UCSC)NOBOX  -     chr7:144397240-144410227 -  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOBOX  -     7q35   [Description]    (hg19-Feb_2009)
GoldenPathNOBOX - 7q35 [CytoView hg19]  NOBOX - 7q35 [CytoView hg38]
ImmunoBaseENSG00000106410
Genome Data Viewer NCBINOBOX [Mapview hg19]  
OMIM610934   611548   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080413
Consensus coding sequences : CCDS (NCBI)NOBOX
Gene ExpressionNOBOX [ NCBI-GEO ]   NOBOX [ EBI - ARRAY_EXPRESS ]   NOBOX [ SEEK ]   NOBOX [ MEM ]
Gene Expression Viewer (FireBrowse)NOBOX [ Firebrowse - Broad ]
GenevisibleExpression of NOBOX in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135935
GTEX Portal (Tissue expression)NOBOX
Human Protein AtlasENSG00000106410-NOBOX [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60393   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60393  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60393
PhosPhoSitePlusO60393
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like_sf    Homeobox_dom    NOBOX   
Domain families : Pfam (Sanger)Homeodomain (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)NOBOX
SuperfamilyO60393
AlphaFold pdb e-kbO60393   
Human Protein Atlas [tissue]ENSG00000106410-NOBOX [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O60393
IntAct (EBI)O60393
BioGRIDNOBOX
STRING (EMBL)NOBOX
ZODIACNOBOX
Ontologies - Pathways
QuickGOO60393
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  regulation of transcription by RNA polymerase II  multicellular organism development  sequence-specific DNA binding  oogenesis  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  regulation of transcription by RNA polymerase II  multicellular organism development  sequence-specific DNA binding  oogenesis  
NDEx NetworkNOBOX
Atlas of Cancer Signalling NetworkNOBOX
Wikipedia pathwaysNOBOX
Orthology - Evolution
OrthoDB135935
GeneTree (enSembl)ENSG00000106410
Phylogenetic Trees/Animal Genes : TreeFamNOBOX
Homologs : HomoloGeneNOBOX
Homology/Alignments : Family Browser (UCSC)NOBOX
Gene fusions - Rearrangements
Fusion : QuiverNOBOX
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOBOX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOBOX
dbVarNOBOX
ClinVarNOBOX
MonarchNOBOX
1000_GenomesNOBOX 
Exome Variant ServerNOBOX
GNOMAD BrowserENSG00000106410
Varsome BrowserNOBOX
ACMGNOBOX variants
VarityO60393
Genomic Variants (DGV)NOBOX [DGVbeta]
DECIPHERNOBOX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOBOX 
Mutations
ICGC Data PortalNOBOX 
TCGA Data PortalNOBOX 
Broad Tumor PortalNOBOX
OASIS PortalNOBOX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOBOX  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNOBOX
Mutations and Diseases : HGMDNOBOX
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNOBOX
DgiDB (Drug Gene Interaction Database)NOBOX
DoCM (Curated mutations)NOBOX
CIViC (Clinical Interpretations of Variants in Cancer)NOBOX
Cancer3DNOBOX
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610934    611548   
Orphanet
DisGeNETNOBOX
MedgenNOBOX
Genetic Testing Registry NOBOX
NextProtO60393 [Medical]
GENETestsNOBOX
Target ValidationNOBOX
Huge Navigator NOBOX [HugePedia]
ClinGenNOBOX
Clinical trials, drugs, therapy
MyCancerGenomeNOBOX
Protein Interactions : CTDNOBOX
Pharm GKB GenePA145007938
PharosO60393
Clinical trialNOBOX
Miscellaneous
canSAR (ICR)NOBOX
HarmonizomeNOBOX
DataMed IndexNOBOX
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNOBOX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:12:52 CEST 2021

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