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NOBOX (NOBOX oogenesis homeobox)

Identity

Alias_symbol (synonym)OG2
Og2x
Other aliasOG-2
OG2X
POF5
TCAG_12042
HGNC (Hugo) NOBOX
LocusID (NCBI) 135935
Atlas_Id 70894
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 144397240 and ends at 144410227 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOBOX   22448
Cards
Entrez_Gene (NCBI)NOBOX  135935  NOBOX oogenesis homeobox
AliasesOG-2; OG2; OG2X; POF5; 
TCAG_12042
GeneCards (Weizmann)NOBOX
Ensembl hg19 (Hinxton)ENSG00000106410 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106410 [Gene_View]  chr7:144397240-144410227 [Contig_View]  NOBOX [Vega]
ICGC DataPortalENSG00000106410
TCGA cBioPortalNOBOX
AceView (NCBI)NOBOX
Genatlas (Paris)NOBOX
WikiGenes135935
SOURCE (Princeton)NOBOX
Genetics Home Reference (NIH)NOBOX
Genomic and cartography
GoldenPath hg38 (UCSC)NOBOX  -     chr7:144397240-144410227 -  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOBOX  -     7q35   [Description]    (hg19-Feb_2009)
EnsemblNOBOX - 7q35 [CytoView hg19]  NOBOX - 7q35 [CytoView hg38]
Mapping of homologs : NCBINOBOX [Mapview hg19]  NOBOX [Mapview hg38]
OMIM610934   611548   
Gene and transcription
Genbank (Entrez)BC152834
RefSeq transcript (Entrez)NM_001080413
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOBOX
Cluster EST : UnigeneHs.558628 [ NCBI ]
CGAP (NCI)Hs.558628
Alternative Splicing GalleryENSG00000106410
Gene ExpressionNOBOX [ NCBI-GEO ]   NOBOX [ EBI - ARRAY_EXPRESS ]   NOBOX [ SEEK ]   NOBOX [ MEM ]
Gene Expression Viewer (FireBrowse)NOBOX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135935
GTEX Portal (Tissue expression)NOBOX
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60393   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60393  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60393
Splice isoforms : SwissVarO60393
PhosPhoSitePlusO60393
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)NOBOX
DMDM Disease mutations135935
Blocks (Seattle)NOBOX
SuperfamilyO60393
Human Protein AtlasENSG00000106410
Peptide AtlasO60393
IPIIPI00061033   IPI00784495   IPI01024961   
Protein Interaction databases
DIP (DOE-UCLA)O60393
IntAct (EBI)O60393
FunCoupENSG00000106410
BioGRIDNOBOX
STRING (EMBL)NOBOX
ZODIACNOBOX
Ontologies - Pathways
QuickGOO60393
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  ovarian follicle development  nucleus  cytoplasm  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  oogenesis  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  ovarian follicle development  nucleus  cytoplasm  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  oogenesis  
NDEx NetworkNOBOX
Atlas of Cancer Signalling NetworkNOBOX
Wikipedia pathwaysNOBOX
Orthology - Evolution
OrthoDB135935
GeneTree (enSembl)ENSG00000106410
Phylogenetic Trees/Animal Genes : TreeFamNOBOX
HOVERGENO60393
HOGENOMO60393
Homologs : HomoloGeneNOBOX
Homology/Alignments : Family Browser (UCSC)NOBOX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOBOX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOBOX
dbVarNOBOX
ClinVarNOBOX
1000_GenomesNOBOX 
Exome Variant ServerNOBOX
ExAC (Exome Aggregation Consortium)NOBOX (select the gene name)
Genetic variants : HAPMAP135935
Genomic Variants (DGV)NOBOX [DGVbeta]
DECIPHERNOBOX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOBOX 
Mutations
ICGC Data PortalNOBOX 
TCGA Data PortalNOBOX 
Broad Tumor PortalNOBOX
OASIS PortalNOBOX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOBOX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOBOX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOBOX
DgiDB (Drug Gene Interaction Database)NOBOX
DoCM (Curated mutations)NOBOX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOBOX (select a term)
intoGenNOBOX
Cancer3DNOBOX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610934    611548   
Orphanet
MedgenNOBOX
Genetic Testing Registry NOBOX
NextProtO60393 [Medical]
TSGene135935
GENETestsNOBOX
Target ValidationNOBOX
Huge Navigator NOBOX [HugePedia]
snp3D : Map Gene to Disease135935
BioCentury BCIQNOBOX
ClinGenNOBOX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD135935
Chemical/Pharm GKB GenePA145007938
Clinical trialNOBOX
Miscellaneous
canSAR (ICR)NOBOX (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOBOX
EVEXNOBOX
GoPubMedNOBOX
iHOPNOBOX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:09 CEST 2017

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