Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NOC2L (nucleolar complex associated 2 homolog (S. cerevisiae))

Identity

Other namesNET15
NET7
NIR
PPP1R112
HGNC (Hugo) NOC2L
LocusID (NCBI) 26155
Location 1p36.33
Location_base_pair Starts at 879583 and ends at 894679 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NOC2L   24517
Cards
Entrez_Gene (NCBI)NOC2L  26155  nucleolar complex associated 2 homolog (S. cerevisiae)
GeneCards (Weizmann)NOC2L
Ensembl (Hinxton)ENSG00000188976 [Gene_View]  chr1:879583-894679 [Contig_View]  NOC2L [Vega]
ICGC DataPortalENSG00000188976
cBioPortalNOC2L
AceView (NCBI)NOC2L
Genatlas (Paris)NOC2L
WikiGenes26155
SOURCE (Princeton)NM_015658
Genomic and cartography
GoldenPath (UCSC)NOC2L  -  1p36.33   chr1:879583-894679 -  1p36.33   [Description]    (hg19-Feb_2009)
EnsemblNOC2L - 1p36.33 [CytoView]
Mapping of homologs : NCBINOC2L [Mapview]
OMIM610770   
Gene and transcription
Genbank (Entrez)AK022756 AK024284 AK092491 AK225239 AK315080
RefSeq transcript (Entrez)NM_015658
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838585 NW_004929288
Consensus coding sequences : CCDS (NCBI)NOC2L
Cluster EST : UnigeneHs.405987 [ NCBI ]
CGAP (NCI)Hs.405987
Alternative Splicing : Fast-db (Paris)GSHG0001643
Alternative Splicing GalleryENSG00000188976
Gene ExpressionNOC2L [ NCBI-GEO ]     NOC2L [ SEEK ]   NOC2L [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3T9 (Uniprot)
NextProtQ9Y3T9  [Medical]
With graphics : InterProQ9Y3T9
Splice isoforms : SwissVarQ9Y3T9 (Swissvar)
Domains : Interpro (EBI)ARM-type_fold [organisation]   Noc2 [organisation]  
Related proteins : CluSTrQ9Y3T9
Domain families : Pfam (Sanger)Noc2 (PF03715)   
Domain families : Pfam (NCBI)pfam03715   
DMDM Disease mutations26155
Blocks (Seattle)Q9Y3T9
Human Protein AtlasENSG00000188976 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9Y3T9
HPRD13166
IPIIPI00411886   IPI00921079   IPI00385785   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3T9
IntAct (EBI)Q9Y3T9
FunCoupENSG00000188976
BioGRIDNOC2L
InParanoidQ9Y3T9
Interologous Interaction database Q9Y3T9
IntegromeDBNOC2L
STRING (EMBL)NOC2L
Ontologies - Pathways
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  negative regulation of B cell apoptotic process  chromatin binding  transcription corepressor activity  protein binding  nucleus  nucleoplasm  nucleolus  transcription, DNA-templated  apoptotic process  nucleosome binding  chromatin assembly  nucleolus to nucleoplasm transport  cellular response to UV  negative regulation of histone acetylation  histone binding  poly(A) RNA binding  repressing transcription factor binding  negative regulation of intrinsic apoptotic signaling pathway  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  negative regulation of B cell apoptotic process  chromatin binding  transcription corepressor activity  protein binding  nucleus  nucleoplasm  nucleolus  transcription, DNA-templated  apoptotic process  nucleosome binding  chromatin assembly  nucleolus to nucleoplasm transport  cellular response to UV  negative regulation of histone acetylation  histone binding  poly(A) RNA binding  repressing transcription factor binding  negative regulation of intrinsic apoptotic signaling pathway  
Protein Interaction DatabaseNOC2L
Wikipedia pathwaysNOC2L
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)NOC2L
snp3D : Map Gene to Disease26155
SNP (GeneSNP Utah)NOC2L
SNP : HGBaseNOC2L
Genetic variants : HAPMAPNOC2L
Exome VariantNOC2L
1000_GenomesNOC2L 
ICGC programENSG00000188976 
Somatic Mutations in Cancer : COSMICNOC2L 
CONAN: Copy Number AnalysisNOC2L 
Mutations and Diseases : HGMDNOC2L
Genomic VariantsNOC2L  NOC2L [DGVbeta]
dbVarNOC2L
ClinVarNOC2L
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM610770   
MedgenNOC2L
GENETestsNOC2L
Disease Genetic AssociationNOC2L
Huge Navigator NOC2L [HugePedia]  NOC2L [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneNOC2L
Homology/Alignments : Family Browser (UCSC)NOC2L
Phylogenetic Trees/Animal Genes : TreeFamNOC2L
Chemical/Protein Interactions : CTD26155
Chemical/Pharm GKB GenePA142671261
Clinical trialNOC2L
Cancer Resource (Charite)ENSG00000188976
Other databases
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
CoreMineNOC2L
iHOPNOC2L
OncoSearchNOC2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:41:25 CEST 2014

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