Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NOC3L (NOC3 like DNA replication regulator)

Identity

Alias_namesC10orf117
chromosome 10 open reading frame 117
nucleolar complex associated 3 homolog (S. cerevisiae)
NOC3-like DNA replication regulator
Alias_symbol (synonym)AD24
FLJ12820
FAD24
Other alias
HGNC (Hugo) NOC3L
LocusID (NCBI) 64318
Atlas_Id 53440
Location 10q23.33  [Link to chromosome band 10q23]
Location_base_pair Starts at 96092983 and ends at 96122733 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ASPH (8q12.3) / NOC3L (10q23.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOC3L   24034
Cards
Entrez_Gene (NCBI)NOC3L  64318  NOC3 like DNA replication regulator
AliasesAD24; C10orf117; FAD24
GeneCards (Weizmann)NOC3L
Ensembl hg19 (Hinxton)ENSG00000173145 [Gene_View]  chr10:96092983-96122733 [Contig_View]  NOC3L [Vega]
Ensembl hg38 (Hinxton)ENSG00000173145 [Gene_View]  chr10:96092983-96122733 [Contig_View]  NOC3L [Vega]
ICGC DataPortalENSG00000173145
TCGA cBioPortalNOC3L
AceView (NCBI)NOC3L
Genatlas (Paris)NOC3L
WikiGenes64318
SOURCE (Princeton)NOC3L
Genetics Home Reference (NIH)NOC3L
Genomic and cartography
GoldenPath hg19 (UCSC)NOC3L  -     chr10:96092983-96122733 -  10q23.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NOC3L  -     10q23.33   [Description]    (hg38-Dec_2013)
EnsemblNOC3L - 10q23.33 [CytoView hg19]  NOC3L - 10q23.33 [CytoView hg38]
Mapping of homologs : NCBINOC3L [Mapview hg19]  NOC3L [Mapview hg38]
OMIM610769   
Gene and transcription
Genbank (Entrez)AB077992 AI632144 AK022882 AK026953 AK091246
RefSeq transcript (Entrez)NM_022451
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)NOC3L
Cluster EST : UnigeneHs.74899 [ NCBI ]
CGAP (NCI)Hs.74899
Alternative Splicing GalleryENSG00000173145
Gene ExpressionNOC3L [ NCBI-GEO ]   NOC3L [ EBI - ARRAY_EXPRESS ]   NOC3L [ SEEK ]   NOC3L [ MEM ]
Gene Expression Viewer (FireBrowse)NOC3L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64318
GTEX Portal (Tissue expression)NOC3L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WTT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WTT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WTT2
Splice isoforms : SwissVarQ8WTT2
PhosPhoSitePlusQ8WTT2
Domains : Interpro (EBI)ARM-type_fold    CCAAT-binding_factor    Noc3_N    Nucleolar_cplx-assoc_3   
Domain families : Pfam (Sanger)CBF (PF03914)    NOC3p (PF07540)   
Domain families : Pfam (NCBI)pfam03914    pfam07540   
Conserved Domain (NCBI)NOC3L
DMDM Disease mutations64318
Blocks (Seattle)NOC3L
SuperfamilyQ8WTT2
Human Protein AtlasENSG00000173145
Peptide AtlasQ8WTT2
HPRD12562
IPIIPI00102815   IPI00843861   IPI01011390   
Protein Interaction databases
DIP (DOE-UCLA)Q8WTT2
IntAct (EBI)Q8WTT2
FunCoupENSG00000173145
BioGRIDNOC3L
STRING (EMBL)NOC3L
ZODIACNOC3L
Ontologies - Pathways
QuickGOQ8WTT2
Ontology : AmiGOchromatin binding  nucleus  nucleolus  nuclear speck  poly(A) RNA binding  fat cell differentiation  
Ontology : EGO-EBIchromatin binding  nucleus  nucleolus  nuclear speck  poly(A) RNA binding  fat cell differentiation  
NDEx NetworkNOC3L
Atlas of Cancer Signalling NetworkNOC3L
Wikipedia pathwaysNOC3L
Orthology - Evolution
OrthoDB64318
GeneTree (enSembl)ENSG00000173145
Phylogenetic Trees/Animal Genes : TreeFamNOC3L
HOVERGENQ8WTT2
HOGENOMQ8WTT2
Homologs : HomoloGeneNOC3L
Homology/Alignments : Family Browser (UCSC)NOC3L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOC3L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOC3L
dbVarNOC3L
ClinVarNOC3L
1000_GenomesNOC3L 
Exome Variant ServerNOC3L
ExAC (Exome Aggregation Consortium)NOC3L (select the gene name)
Genetic variants : HAPMAP64318
Genomic Variants (DGV)NOC3L [DGVbeta]
DECIPHER (Syndromes)10:96092983-96122733  ENSG00000173145
CONAN: Copy Number AnalysisNOC3L 
Mutations
ICGC Data PortalNOC3L 
TCGA Data PortalNOC3L 
Broad Tumor PortalNOC3L
OASIS PortalNOC3L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOC3L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOC3L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOC3L
DgiDB (Drug Gene Interaction Database)NOC3L
DoCM (Curated mutations)NOC3L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOC3L (select a term)
intoGenNOC3L
Cancer3DNOC3L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610769   
Orphanet
MedgenNOC3L
Genetic Testing Registry NOC3L
NextProtQ8WTT2 [Medical]
TSGene64318
GENETestsNOC3L
Huge Navigator NOC3L [HugePedia]
snp3D : Map Gene to Disease64318
BioCentury BCIQNOC3L
ClinGenNOC3L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64318
Chemical/Pharm GKB GenePA134887727
Clinical trialNOC3L
Miscellaneous
canSAR (ICR)NOC3L (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOC3L
EVEXNOC3L
GoPubMedNOC3L
iHOPNOC3L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:19:03 CET 2017

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