Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NOC4L (nucleolar complex associated 4 homolog)

Identity

Alias_namesnucleolar complex associated 4 homolog (S. cerevisiae)
Alias_symbol (synonym)MGC3162
NET49
UTP19
Other aliasNOC4
HGNC (Hugo) NOC4L
LocusID (NCBI) 79050
Atlas_Id 54505
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 132628972 and ends at 132637018 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AGRN (1p36.33) / NOC4L (12q24.33)ANKLE2 (12q24.33) / NOC4L (12q24.33)ERF (19q13.2) / NOC4L (12q24.33)
NOC4L (12q24.33) / FAM129A (1q25.3)NOC4L (12q24.33) / FBRSL1 (12q24.33)NOC4L (12q24.33) / PTOV1 (19q13.33)
NOC4L (12q24.33) / RAB3GAP2 (1q41)NOC4L (12q24.33) / SDS (12q24.13)NOC4L (12q24.33) / STAB2 (12q23.3)
PANK4 (1p36.32) / NOC4L (12q24.33)SAMD11 (1p36.33) / NOC4L (12q24.33)TTYH3 (7p22.3) / NOC4L (12q24.33)
AGRN 1p36.33 / NOC4L 12q24.33NOC4L 12q24.33 / SDS 12q24.13NOC4L 12q24.33 / STAB2 12q23.3
TTYH3 7p22.3 / NOC4L 12q24.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOC4L   28461
Cards
Entrez_Gene (NCBI)NOC4L  79050  nucleolar complex associated 4 homolog
AliasesNET49; NOC4; UTP19
GeneCards (Weizmann)NOC4L
Ensembl hg19 (Hinxton)ENSG00000184967 [Gene_View]  chr12:132628972-132637018 [Contig_View]  NOC4L [Vega]
Ensembl hg38 (Hinxton)ENSG00000184967 [Gene_View]  chr12:132628972-132637018 [Contig_View]  NOC4L [Vega]
ICGC DataPortalENSG00000184967
TCGA cBioPortalNOC4L
AceView (NCBI)NOC4L
Genatlas (Paris)NOC4L
WikiGenes79050
SOURCE (Princeton)NOC4L
Genetics Home Reference (NIH)NOC4L
Genomic and cartography
GoldenPath hg19 (UCSC)NOC4L  -     chr12:132628972-132637018 +  12q24.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NOC4L  -     12q24.33   [Description]    (hg38-Dec_2013)
EnsemblNOC4L - 12q24.33 [CytoView hg19]  NOC4L - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBINOC4L [Mapview hg19]  NOC4L [Mapview hg38]
OMIM612819   
Gene and transcription
Genbank (Entrez)AW731886 BC001191 BC007893 BC071958 DQ892518
RefSeq transcript (Entrez)NM_024078
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929386
Consensus coding sequences : CCDS (NCBI)NOC4L
Cluster EST : UnigeneHs.558536 [ NCBI ]
CGAP (NCI)Hs.558536
Alternative Splicing GalleryENSG00000184967
Gene ExpressionNOC4L [ NCBI-GEO ]   NOC4L [ EBI - ARRAY_EXPRESS ]   NOC4L [ SEEK ]   NOC4L [ MEM ]
Gene Expression Viewer (FireBrowse)NOC4L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79050
GTEX Portal (Tissue expression)NOC4L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVI4
Splice isoforms : SwissVarQ9BVI4
PhosPhoSitePlusQ9BVI4
Domains : Interpro (EBI)ARM-type_fold    CCAAT-binding_factor    Noc4   
Domain families : Pfam (Sanger)CBF (PF03914)   
Domain families : Pfam (NCBI)pfam03914   
Conserved Domain (NCBI)NOC4L
DMDM Disease mutations79050
Blocks (Seattle)NOC4L
SuperfamilyQ9BVI4
Human Protein AtlasENSG00000184967
Peptide AtlasQ9BVI4
HPRD14543
IPIIPI00031661   IPI01015153   IPI01014662   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVI4
IntAct (EBI)Q9BVI4
FunCoupENSG00000184967
BioGRIDNOC4L
STRING (EMBL)NOC4L
ZODIACNOC4L
Ontologies - Pathways
QuickGOQ9BVI4
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  protein binding  nucleus  nucleoplasm  nucleolus  nucleolus  nucleolus  rRNA processing  rRNA processing  integral component of membrane  Noc4p-Nop14p complex  nuclear membrane  small-subunit processome  poly(A) RNA binding  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  protein binding  nucleus  nucleoplasm  nucleolus  nucleolus  nucleolus  rRNA processing  rRNA processing  integral component of membrane  Noc4p-Nop14p complex  nuclear membrane  small-subunit processome  poly(A) RNA binding  
NDEx NetworkNOC4L
Atlas of Cancer Signalling NetworkNOC4L
Wikipedia pathwaysNOC4L
Orthology - Evolution
OrthoDB79050
GeneTree (enSembl)ENSG00000184967
Phylogenetic Trees/Animal Genes : TreeFamNOC4L
HOVERGENQ9BVI4
HOGENOMQ9BVI4
Homologs : HomoloGeneNOC4L
Homology/Alignments : Family Browser (UCSC)NOC4L
Gene fusions - Rearrangements
Fusion : MitelmanAGRN/NOC4L [1p36.33/12q24.33]  [t(1;12)(p36;q24)]  
Fusion : MitelmanNOC4L/SDS [12q24.33/12q24.13]  [t(12;12)(q24;q24)]  
Fusion : MitelmanNOC4L/STAB2 [12q24.33/12q23.3]  [t(12;12)(q23;q24)]  
Fusion : MitelmanTTYH3/NOC4L [7p22.3/12q24.33]  [t(7;12)(p22;q24)]  
Fusion: TCGAAGRN 1p36.33 NOC4L 12q24.33 BRCA LUSC
Fusion: TCGANOC4L 12q24.33 SDS 12q24.13 GBM
Fusion: TCGANOC4L 12q24.33 STAB2 12q23.3 LUSC
Fusion: TCGATTYH3 7p22.3 NOC4L 12q24.33 SKCM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOC4L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOC4L
dbVarNOC4L
ClinVarNOC4L
1000_GenomesNOC4L 
Exome Variant ServerNOC4L
ExAC (Exome Aggregation Consortium)NOC4L (select the gene name)
Genetic variants : HAPMAP79050
Genomic Variants (DGV)NOC4L [DGVbeta]
DECIPHER (Syndromes)12:132628972-132637018  ENSG00000184967
CONAN: Copy Number AnalysisNOC4L 
Mutations
ICGC Data PortalNOC4L 
TCGA Data PortalNOC4L 
Broad Tumor PortalNOC4L
OASIS PortalNOC4L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOC4L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOC4L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOC4L
DgiDB (Drug Gene Interaction Database)NOC4L
DoCM (Curated mutations)NOC4L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOC4L (select a term)
intoGenNOC4L
Cancer3DNOC4L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612819   
Orphanet
MedgenNOC4L
Genetic Testing Registry NOC4L
NextProtQ9BVI4 [Medical]
TSGene79050
GENETestsNOC4L
Huge Navigator NOC4L [HugePedia]
snp3D : Map Gene to Disease79050
BioCentury BCIQNOC4L
ClinGenNOC4L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79050
Chemical/Pharm GKB GenePA142671262
Clinical trialNOC4L
Miscellaneous
canSAR (ICR)NOC4L (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOC4L
EVEXNOC4L
GoPubMedNOC4L
iHOPNOC4L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:19:03 CET 2017

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