Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NOCT (nocturnin)

Identity

Alias_namesCCRN4L
CCR4-like (carbon catabolite repression 4, S.cerevisiae)
CCR4 carbon catabolite repression 4-like (S. cerevisiae)
Alias_symbol (synonym)CCR4L
Ccr4c
NOC
Other alias
HGNC (Hugo) NOCT
LocusID (NCBI) 25819
Atlas_Id 46547
Location 4q31.1  [Link to chromosome band 4q31]
Location_base_pair Starts at 139936913 and ends at 139967093 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NOCT (4q31.1) / CRLF3 (17q11.2)NOCT (4q31.1) / MMS19 (10q24.1)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NOCT   14254
Cards
Entrez_Gene (NCBI)NOCT  25819  nocturnin
AliasesCCR4L; CCRN4L; Ccr4c; NOC
GeneCards (Weizmann)NOCT
Ensembl hg19 (Hinxton)ENSG00000151014 [Gene_View]  chr4:139936913-139967093 [Contig_View]  NOCT [Vega]
Ensembl hg38 (Hinxton)ENSG00000151014 [Gene_View]  chr4:139936913-139967093 [Contig_View]  NOCT [Vega]
ICGC DataPortalENSG00000151014
TCGA cBioPortalNOCT
AceView (NCBI)NOCT
Genatlas (Paris)NOCT
WikiGenes25819
SOURCE (Princeton)NOCT
Genetics Home Reference (NIH)NOCT
Genomic and cartography
GoldenPath hg19 (UCSC)NOCT  -     chr4:139936913-139967093 +  4q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NOCT  -     4q31.1   [Description]    (hg38-Dec_2013)
EnsemblNOCT - 4q31.1 [CytoView hg19]  NOCT - 4q31.1 [CytoView hg38]
Mapping of homologs : NCBINOCT [Mapview hg19]  NOCT [Mapview hg38]
OMIM608468   
Gene and transcription
Genbank (Entrez)AF183961 AF199493 AF199494 BC021963 BC023512
RefSeq transcript (Entrez)NM_012118
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)NOCT
Cluster EST : UnigeneHs.656047 [ NCBI ]
CGAP (NCI)Hs.656047
Alternative Splicing GalleryENSG00000151014
Gene ExpressionNOCT [ NCBI-GEO ]   NOCT [ EBI - ARRAY_EXPRESS ]   NOCT [ SEEK ]   NOCT [ MEM ]
Gene Expression Viewer (FireBrowse)NOCT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25819
GTEX Portal (Tissue expression)NOCT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK39   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK39  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK39
Splice isoforms : SwissVarQ9UK39
Catalytic activity : Enzyme3.1.13.4 [ Enzyme-Expasy ]   3.1.13.43.1.13.4 [ IntEnz-EBI ]   3.1.13.4 [ BRENDA ]   3.1.13.4 [ KEGG ]   
PhosPhoSitePlusQ9UK39
Domains : Interpro (EBI)Endo/exonuclease/phosphatase   
Domain families : Pfam (Sanger)Exo_endo_phos (PF03372)   
Domain families : Pfam (NCBI)pfam03372   
Conserved Domain (NCBI)NOCT
DMDM Disease mutations25819
Blocks (Seattle)NOCT
SuperfamilyQ9UK39
Human Protein AtlasENSG00000151014
Peptide AtlasQ9UK39
HPRD16337
IPIIPI00015890   IPI00744490   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK39
IntAct (EBI)Q9UK39
FunCoupENSG00000151014
BioGRIDNOCT
STRING (EMBL)NOCT
ZODIACNOCT
Ontologies - Pathways
QuickGOQ9UK39
Ontology : AmiGOdeadenylation-dependent decapping of nuclear-transcribed mRNA  cytoplasmic mRNA processing body  transcription factor activity, sequence-specific DNA binding  mRNA binding  poly(A)-specific ribonuclease activity  nucleus  nucleoplasm  cytoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  mRNA processing  circadian rhythm  response to extracellular stimulus  negative regulation of gene expression  response to lipopolysaccharide  circadian regulation of gene expression  cytoplasmic mRNA processing body assembly  regulation of circadian rhythm  positive regulation of fat cell differentiation  negative regulation of osteoblast differentiation  regulation of embryonic development  metal ion binding  mRNA stabilization  perinuclear region of cytoplasm  RNA phosphodiester bond hydrolysis, exonucleolytic  
Ontology : EGO-EBIdeadenylation-dependent decapping of nuclear-transcribed mRNA  cytoplasmic mRNA processing body  transcription factor activity, sequence-specific DNA binding  mRNA binding  poly(A)-specific ribonuclease activity  nucleus  nucleoplasm  cytoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  mRNA processing  circadian rhythm  response to extracellular stimulus  negative regulation of gene expression  response to lipopolysaccharide  circadian regulation of gene expression  cytoplasmic mRNA processing body assembly  regulation of circadian rhythm  positive regulation of fat cell differentiation  negative regulation of osteoblast differentiation  regulation of embryonic development  metal ion binding  mRNA stabilization  perinuclear region of cytoplasm  RNA phosphodiester bond hydrolysis, exonucleolytic  
NDEx NetworkNOCT
Atlas of Cancer Signalling NetworkNOCT
Wikipedia pathwaysNOCT
Orthology - Evolution
OrthoDB25819
GeneTree (enSembl)ENSG00000151014
Phylogenetic Trees/Animal Genes : TreeFamNOCT
HOVERGENQ9UK39
HOGENOMQ9UK39
Homologs : HomoloGeneNOCT
Homology/Alignments : Family Browser (UCSC)NOCT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOCT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOCT
dbVarNOCT
ClinVarNOCT
1000_GenomesNOCT 
Exome Variant ServerNOCT
ExAC (Exome Aggregation Consortium)NOCT (select the gene name)
Genetic variants : HAPMAP25819
Genomic Variants (DGV)NOCT [DGVbeta]
DECIPHER (Syndromes)4:139936913-139967093  ENSG00000151014
CONAN: Copy Number AnalysisNOCT 
Mutations
ICGC Data PortalNOCT 
TCGA Data PortalNOCT 
Broad Tumor PortalNOCT
OASIS PortalNOCT [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNOCT
BioMutasearch NOCT
DgiDB (Drug Gene Interaction Database)NOCT
DoCM (Curated mutations)NOCT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOCT (select a term)
intoGenNOCT
Cancer3DNOCT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608468   
Orphanet
MedgenNOCT
Genetic Testing Registry NOCT
NextProtQ9UK39 [Medical]
TSGene25819
GENETestsNOCT
Huge Navigator NOCT [HugePedia]
snp3D : Map Gene to Disease25819
BioCentury BCIQNOCT
ClinGenNOCT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25819
Chemical/Pharm GKB GenePA26176
Clinical trialNOCT
Miscellaneous
canSAR (ICR)NOCT (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOCT
EVEXNOCT
GoPubMedNOCT
iHOPNOCT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:26 CEST 2017

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