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NOL12 (nucleolar protein 12)

Identity

Alias_symbol (synonym)MGC3731
Nop25
RRP17
Other aliasdJ37E16.7
HGNC (Hugo) NOL12
LocusID (NCBI) 79159
Atlas_Id 70897
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 37686337 and ends at 37693478 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOL12   28585
Cards
Entrez_Gene (NCBI)NOL12  79159  nucleolar protein 12
AliasesNop25; dJ37E16.7
GeneCards (Weizmann)NOL12
Ensembl hg19 (Hinxton)ENSG00000273899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273899 [Gene_View]  chr22:37686337-37693478 [Contig_View]  NOL12 [Vega]
ICGC DataPortalENSG00000273899
TCGA cBioPortalNOL12
AceView (NCBI)NOL12
Genatlas (Paris)NOL12
WikiGenes79159
SOURCE (Princeton)NOL12
Genetics Home Reference (NIH)NOL12
Genomic and cartography
GoldenPath hg38 (UCSC)NOL12  -     chr22:37686337-37693478 +  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOL12  -     22q13.1   [Description]    (hg19-Feb_2009)
EnsemblNOL12 - 22q13.1 [CytoView hg19]  NOL12 - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBINOL12 [Mapview hg19]  NOL12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057139 AK091928 AK294700 AK310084 AK316443
RefSeq transcript (Entrez)NM_024313
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOL12
Cluster EST : UnigeneHs.632778 [ NCBI ]
CGAP (NCI)Hs.632778
Alternative Splicing GalleryENSG00000273899
Gene ExpressionNOL12 [ NCBI-GEO ]   NOL12 [ EBI - ARRAY_EXPRESS ]   NOL12 [ SEEK ]   NOL12 [ MEM ]
Gene Expression Viewer (FireBrowse)NOL12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79159
GTEX Portal (Tissue expression)NOL12
Human Protein AtlasENSG00000273899-NOL12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGY1
Splice isoforms : SwissVarQ9UGY1
PhosPhoSitePlusQ9UGY1
Domains : Interpro (EBI)Nucleolar_protein_12   
Domain families : Pfam (Sanger)Nop25 (PF09805)   
Domain families : Pfam (NCBI)pfam09805   
Conserved Domain (NCBI)NOL12
DMDM Disease mutations79159
Blocks (Seattle)NOL12
SuperfamilyQ9UGY1
Human Protein Atlas [tissue]ENSG00000273899-NOL12 [tissue]
Peptide AtlasQ9UGY1
HPRD17537
IPIIPI00013313   IPI00981956   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGY1
IntAct (EBI)Q9UGY1
FunCoupENSG00000273899
BioGRIDNOL12
STRING (EMBL)NOL12
ZODIACNOL12
Ontologies - Pathways
QuickGOQ9UGY1
Ontology : AmiGORNA binding  protein binding  nucleolus  rRNA binding  
Ontology : EGO-EBIRNA binding  protein binding  nucleolus  rRNA binding  
NDEx NetworkNOL12
Atlas of Cancer Signalling NetworkNOL12
Wikipedia pathwaysNOL12
Orthology - Evolution
OrthoDB79159
GeneTree (enSembl)ENSG00000273899
Phylogenetic Trees/Animal Genes : TreeFamNOL12
HOVERGENQ9UGY1
HOGENOMQ9UGY1
Homologs : HomoloGeneNOL12
Homology/Alignments : Family Browser (UCSC)NOL12
Gene fusions - Rearrangements
Fusion: Tumor Portal NOL12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOL12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOL12
dbVarNOL12
ClinVarNOL12
1000_GenomesNOL12 
Exome Variant ServerNOL12
ExAC (Exome Aggregation Consortium)ENSG00000273899
GNOMAD BrowserENSG00000273899
Genetic variants : HAPMAP79159
Genomic Variants (DGV)NOL12 [DGVbeta]
DECIPHERNOL12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOL12 
Mutations
ICGC Data PortalNOL12 
TCGA Data PortalNOL12 
Broad Tumor PortalNOL12
OASIS PortalNOL12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOL12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOL12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOL12
DgiDB (Drug Gene Interaction Database)NOL12
DoCM (Curated mutations)NOL12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOL12 (select a term)
intoGenNOL12
Cancer3DNOL12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNOL12
Genetic Testing Registry NOL12
NextProtQ9UGY1 [Medical]
TSGene79159
GENETestsNOL12
Target ValidationNOL12
Huge Navigator NOL12 [HugePedia]
snp3D : Map Gene to Disease79159
BioCentury BCIQNOL12
ClinGenNOL12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79159
Chemical/Pharm GKB GenePA145148362
Clinical trialNOL12
Miscellaneous
canSAR (ICR)NOL12 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOL12
EVEXNOL12
GoPubMedNOL12
iHOPNOL12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:19:09 CET 2017

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