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NOL4 (nucleolar protein 4)

Identity

Alias_symbol (synonym)NOLP
HRIHFB2255
CT125
Other alias
HGNC (Hugo) NOL4
LocusID (NCBI) 8715
Atlas_Id 54506
Location 18q12.1  [Link to chromosome band 18q12]
Location_base_pair Starts at 31431064 and ends at 31803515 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IGHA2 (14q32.33) / NOL4 (18q12.1)NEFM (8p21.2) / NOL4 (18q12.1)NOL4 (18q12.1) / TOX4 (14q11.2)
PVT1 (8q24.21) / NOL4 (18q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)NOL4   7870
Cards
Entrez_Gene (NCBI)NOL4  8715  nucleolar protein 4
AliasesCT125; HRIHFB2255; NOLP
GeneCards (Weizmann)NOL4
Ensembl hg19 (Hinxton)ENSG00000101746 [Gene_View]  chr18:31431064-31803515 [Contig_View]  NOL4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101746 [Gene_View]  chr18:31431064-31803515 [Contig_View]  NOL4 [Vega]
ICGC DataPortalENSG00000101746
TCGA cBioPortalNOL4
AceView (NCBI)NOL4
Genatlas (Paris)NOL4
WikiGenes8715
SOURCE (Princeton)NOL4
Genetics Home Reference (NIH)NOL4
Genomic and cartography
GoldenPath hg19 (UCSC)NOL4  -     chr18:31431064-31803515 -  18q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NOL4  -     18q12.1   [Description]    (hg38-Dec_2013)
EnsemblNOL4 - 18q12.1 [CytoView hg19]  NOL4 - 18q12.1 [CytoView hg38]
Mapping of homologs : NCBINOL4 [Mapview hg19]  NOL4 [Mapview hg38]
OMIM603577   
Gene and transcription
Genbank (Entrez)AA430033 AB015339 AB017800 AK091463 AK296539
RefSeq transcript (Entrez)NM_001198546 NM_001198547 NM_001198548 NM_001198549 NM_001282527 NM_003787
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)NOL4
Cluster EST : UnigeneHs.514795 [ NCBI ]
CGAP (NCI)Hs.514795
Alternative Splicing GalleryENSG00000101746
Gene ExpressionNOL4 [ NCBI-GEO ]   NOL4 [ EBI - ARRAY_EXPRESS ]   NOL4 [ SEEK ]   NOL4 [ MEM ]
Gene Expression Viewer (FireBrowse)NOL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8715
GTEX Portal (Tissue expression)NOL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94818   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94818  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94818
Splice isoforms : SwissVarO94818
PhosPhoSitePlusO94818
Domains : Interpro (EBI)NOL4   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NOL4
DMDM Disease mutations8715
Blocks (Seattle)NOL4
SuperfamilyO94818
Human Protein AtlasENSG00000101746
Peptide AtlasO94818
HPRD04657
IPIIPI00021556   IPI00032281   IPI01014279   IPI00645302   IPI00978229   IPI00977618   
Protein Interaction databases
DIP (DOE-UCLA)O94818
IntAct (EBI)O94818
FunCoupENSG00000101746
BioGRIDNOL4
STRING (EMBL)NOL4
ZODIACNOL4
Ontologies - Pathways
QuickGOO94818
Ontology : AmiGORNA binding  protein binding  nucleus  nucleolus  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleolus  
NDEx NetworkNOL4
Atlas of Cancer Signalling NetworkNOL4
Wikipedia pathwaysNOL4
Orthology - Evolution
OrthoDB8715
GeneTree (enSembl)ENSG00000101746
Phylogenetic Trees/Animal Genes : TreeFamNOL4
HOVERGENO94818
HOGENOMO94818
Homologs : HomoloGeneNOL4
Homology/Alignments : Family Browser (UCSC)NOL4
Gene fusions - Rearrangements
Fusion : MitelmanIGHA2/NOL4 [14q32.33/18q12.1]  [t(14;18)(q32;q12)]  
Fusion : MitelmanPVT1/NOL4 [8q24.21/18q12.1]  [t(8;18)(q24;q12)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOL4
dbVarNOL4
ClinVarNOL4
1000_GenomesNOL4 
Exome Variant ServerNOL4
ExAC (Exome Aggregation Consortium)NOL4 (select the gene name)
Genetic variants : HAPMAP8715
Genomic Variants (DGV)NOL4 [DGVbeta]
DECIPHER (Syndromes)18:31431064-31803515  ENSG00000101746
CONAN: Copy Number AnalysisNOL4 
Mutations
ICGC Data PortalNOL4 
TCGA Data PortalNOL4 
Broad Tumor PortalNOL4
OASIS PortalNOL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOL4
DgiDB (Drug Gene Interaction Database)NOL4
DoCM (Curated mutations)NOL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOL4 (select a term)
intoGenNOL4
Cancer3DNOL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603577   
Orphanet
MedgenNOL4
Genetic Testing Registry NOL4
NextProtO94818 [Medical]
TSGene8715
GENETestsNOL4
Huge Navigator NOL4 [HugePedia]
snp3D : Map Gene to Disease8715
BioCentury BCIQNOL4
ClinGenNOL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8715
Chemical/Pharm GKB GenePA31674
Clinical trialNOL4
Miscellaneous
canSAR (ICR)NOL4 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOL4
EVEXNOL4
GoPubMedNOL4
iHOPNOL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:27 CEST 2017

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