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NOL4L (nucleolar protein 4 like)

Identity

Alias_namesC20orf113
C20orf112
chromosome 20 open reading frame 113
chromosome 20 open reading frame 112
Alias_symbol (synonym)dJ1184F4.2
DKFZP566G1424
dJ1184F4.4
Other alias
HGNC (Hugo) NOL4L
LocusID (NCBI) 140688
Atlas_Id 51676
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 32443059 and ends at 32585073 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACTB (7p22.1) / NOL4L (20q11.21)MMD (17q22) / NOL4L (20q11.21)NOL4L (20q11.21) / COMMD7 (20q11.21)
PAX5 (9p13.2) / NOL4L (20q11.21)RUNX1 (21q22.12) / NOL4L (20q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOL4L   16106
Cards
Entrez_Gene (NCBI)NOL4L  140688  nucleolar protein 4 like
AliasesC20orf112; C20orf113; dJ1184F4.2; dJ1184F4.4
GeneCards (Weizmann)NOL4L
Ensembl hg19 (Hinxton)ENSG00000197183 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197183 [Gene_View]  chr20:32443059-32585073 [Contig_View]  NOL4L [Vega]
ICGC DataPortalENSG00000197183
TCGA cBioPortalNOL4L
AceView (NCBI)NOL4L
Genatlas (Paris)NOL4L
WikiGenes140688
SOURCE (Princeton)NOL4L
Genetics Home Reference (NIH)NOL4L
Genomic and cartography
GoldenPath hg38 (UCSC)NOL4L  -     chr20:32443059-32585073 -  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOL4L  -     20q11.21   [Description]    (hg19-Feb_2009)
EnsemblNOL4L - 20q11.21 [CytoView hg19]  NOL4L - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBINOL4L [Mapview hg19]  NOL4L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056286 AK097804 AL122043 AL834520 BC023657
RefSeq transcript (Entrez)NM_001256798 NM_080616
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOL4L
Cluster EST : UnigeneHs.729596 [ NCBI ]
CGAP (NCI)Hs.729596
Alternative Splicing GalleryENSG00000197183
Gene ExpressionNOL4L [ NCBI-GEO ]   NOL4L [ EBI - ARRAY_EXPRESS ]   NOL4L [ SEEK ]   NOL4L [ MEM ]
Gene Expression Viewer (FireBrowse)NOL4L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140688
GTEX Portal (Tissue expression)NOL4L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MY1
Splice isoforms : SwissVarQ96MY1
PhosPhoSitePlusQ96MY1
Domains : Interpro (EBI)NOL4L   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NOL4L
DMDM Disease mutations140688
Blocks (Seattle)NOL4L
SuperfamilyQ96MY1
Human Protein AtlasENSG00000197183
Peptide AtlasQ96MY1
HPRD10728
IPIIPI00289086   IPI00607558   IPI00872049   IPI00644822   IPI00645248   IPI00647935   IPI00552263   IPI00645330   
Protein Interaction databases
DIP (DOE-UCLA)Q96MY1
IntAct (EBI)Q96MY1
FunCoupENSG00000197183
BioGRIDNOL4L
STRING (EMBL)NOL4L
ZODIACNOL4L
Ontologies - Pathways
QuickGOQ96MY1
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  
NDEx NetworkNOL4L
Atlas of Cancer Signalling NetworkNOL4L
Wikipedia pathwaysNOL4L
Orthology - Evolution
OrthoDB140688
GeneTree (enSembl)ENSG00000197183
Phylogenetic Trees/Animal Genes : TreeFamNOL4L
HOVERGENQ96MY1
HOGENOMQ96MY1
Homologs : HomoloGeneNOL4L
Homology/Alignments : Family Browser (UCSC)NOL4L
Gene fusions - Rearrangements
Fusion : MitelmanACTB/NOL4L [7p22.1/20q11.21]  [t(7;20)(p22;q11)]  
Fusion : MitelmanPAX5/NOL4L [9p13.2/20q11.21]  [dic(9;20)(p13;q11)]  
Fusion : MitelmanRUNX1/NOL4L [21q22.12/20q11.21]  [t(20;21)(q11;q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOL4L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOL4L
dbVarNOL4L
ClinVarNOL4L
1000_GenomesNOL4L 
Exome Variant ServerNOL4L
ExAC (Exome Aggregation Consortium)NOL4L (select the gene name)
Genetic variants : HAPMAP140688
Genomic Variants (DGV)NOL4L [DGVbeta]
DECIPHERNOL4L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOL4L 
Mutations
ICGC Data PortalNOL4L 
TCGA Data PortalNOL4L 
Broad Tumor PortalNOL4L
OASIS PortalNOL4L [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNOL4L
BioMutasearch NOL4L
DgiDB (Drug Gene Interaction Database)NOL4L
DoCM (Curated mutations)NOL4L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOL4L (select a term)
intoGenNOL4L
Cancer3DNOL4L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNOL4L
Genetic Testing Registry NOL4L
NextProtQ96MY1 [Medical]
TSGene140688
GENETestsNOL4L
Target ValidationNOL4L
Huge Navigator NOL4L [HugePedia]
snp3D : Map Gene to Disease140688
BioCentury BCIQNOL4L
ClinGenNOL4L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140688
Chemical/Pharm GKB GenePA25652
Clinical trialNOL4L
Miscellaneous
canSAR (ICR)NOL4L (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOL4L
EVEXNOL4L
GoPubMedNOL4L
iHOPNOL4L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:47:06 CEST 2017

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