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NOL6 (nucleolar protein 6)

Identity

Alias_namesnucleolar protein family 6 (RNA-associated)
nucleolar protein 6 (RNA-associated)
Alias_symbol (synonym)bA311H10.1
Nrap
FLJ21959
MGC14896
MGC14921
MGC20838
UTP22
Other aliasNRAP
HGNC (Hugo) NOL6
LocusID (NCBI) 65083
Atlas_Id 70898
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 33461353 and ends at 33473943 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADCY2 (5p15.31) / NOL6 (9p13.3)APTX (9p21.1) / NOL6 (9p13.3)HNRNPD (4q21.22) / NOL6 (9p13.3)
NOL6 (9p13.3) / NOL6 (9p13.3)NOL6 (9p13.3) / TMEM59L (19p13.11)SUGT1P () / NOL6 (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOL6   19910
Cards
Entrez_Gene (NCBI)NOL6  65083  nucleolar protein 6
AliasesNRAP; UTP22; bA311H10.1
GeneCards (Weizmann)NOL6
Ensembl hg19 (Hinxton)ENSG00000165271 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165271 [Gene_View]  chr9:33461353-33473943 [Contig_View]  NOL6 [Vega]
ICGC DataPortalENSG00000165271
TCGA cBioPortalNOL6
AceView (NCBI)NOL6
Genatlas (Paris)NOL6
WikiGenes65083
SOURCE (Princeton)NOL6
Genetics Home Reference (NIH)NOL6
Genomic and cartography
GoldenPath hg38 (UCSC)NOL6  -     chr9:33461353-33473943 -  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOL6  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblNOL6 - 9p13.3 [CytoView hg19]  NOL6 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBINOL6 [Mapview hg19]  NOL6 [Mapview hg38]
OMIM611532   
Gene and transcription
Genbank (Entrez)AF361079 AF361080 AF361081 AK025612 AK026193
RefSeq transcript (Entrez)NM_022917 NM_130793 NM_139235
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOL6
Cluster EST : UnigeneHs.493709 [ NCBI ]
CGAP (NCI)Hs.493709
Alternative Splicing GalleryENSG00000165271
Gene ExpressionNOL6 [ NCBI-GEO ]   NOL6 [ EBI - ARRAY_EXPRESS ]   NOL6 [ SEEK ]   NOL6 [ MEM ]
Gene Expression Viewer (FireBrowse)NOL6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65083
GTEX Portal (Tissue expression)NOL6
Human Protein AtlasENSG00000165271-NOL6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6R4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6R4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6R4
Splice isoforms : SwissVarQ9H6R4
PhosPhoSitePlusQ9H6R4
Domains : Interpro (EBI)Nrap   
Domain families : Pfam (Sanger)Nrap (PF03813)   
Domain families : Pfam (NCBI)pfam03813   
Conserved Domain (NCBI)NOL6
DMDM Disease mutations65083
Blocks (Seattle)NOL6
SuperfamilyQ9H6R4
Human Protein Atlas [tissue]ENSG00000165271-NOL6 [tissue]
Peptide AtlasQ9H6R4
HPRD14832
IPIIPI00152890   IPI00291903   IPI00556218   IPI01014186   IPI01019086   IPI00157845   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6R4
IntAct (EBI)Q9H6R4
FunCoupENSG00000165271
BioGRIDNOL6
STRING (EMBL)NOL6
ZODIACNOL6
Ontologies - Pathways
QuickGOQ9H6R4
Ontology : AmiGOcondensed nuclear chromosome  RNA binding  nucleus  nucleoplasm  nucleolus  nucleolus  mitochondrion  rRNA processing  rRNA processing  rRNA processing  tRNA export from nucleus  small-subunit processome  CURI complex  UTP-C complex  
Ontology : EGO-EBIcondensed nuclear chRomosmå  RNA binding  nucleus  nucleoplasm  nucleolus  nucleolus  mitochondrion  rRNA processing  rRNA processing  rRNA processing  tRNA export from nucleus  small-subunit processome  CURI complex  UTP-C complex  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkNOL6
Atlas of Cancer Signalling NetworkNOL6
Wikipedia pathwaysNOL6
Orthology - Evolution
OrthoDB65083
GeneTree (enSembl)ENSG00000165271
Phylogenetic Trees/Animal Genes : TreeFamNOL6
HOVERGENQ9H6R4
HOGENOMQ9H6R4
Homologs : HomoloGeneNOL6
Homology/Alignments : Family Browser (UCSC)NOL6
Gene fusions - Rearrangements
Fusion: Tumor Portal NOL6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOL6
dbVarNOL6
ClinVarNOL6
1000_GenomesNOL6 
Exome Variant ServerNOL6
ExAC (Exome Aggregation Consortium)ENSG00000165271
GNOMAD BrowserENSG00000165271
Genetic variants : HAPMAP65083
Genomic Variants (DGV)NOL6 [DGVbeta]
DECIPHERNOL6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOL6 
Mutations
ICGC Data PortalNOL6 
TCGA Data PortalNOL6 
Broad Tumor PortalNOL6
OASIS PortalNOL6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOL6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOL6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOL6
DgiDB (Drug Gene Interaction Database)NOL6
DoCM (Curated mutations)NOL6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOL6 (select a term)
intoGenNOL6
Cancer3DNOL6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611532   
Orphanet
MedgenNOL6
Genetic Testing Registry NOL6
NextProtQ9H6R4 [Medical]
TSGene65083
GENETestsNOL6
Target ValidationNOL6
Huge Navigator NOL6 [HugePedia]
snp3D : Map Gene to Disease65083
BioCentury BCIQNOL6
ClinGenNOL6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65083
Chemical/Pharm GKB GenePA134979388
Clinical trialNOL6
Miscellaneous
canSAR (ICR)NOL6 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOL6
EVEXNOL6
GoPubMedNOL6
iHOPNOL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:19:09 CET 2017

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