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NOL7 (nucleolar protein 7)

Identity

Alias (NCBI)C6orf90
PQBP3
RARG-1
dJ223E5.2
HGNC (Hugo) NOL7
HGNC Alias symbNOP27
RARG-1
dJ223E5.2
HGNC Previous nameC6orf90
 PQBP3
HGNC Previous namechromosome 6 open reading frame 90
 polyglutamine binding protein 3
 nucleolar protein 7, 27kDa
LocusID (NCBI) 51406
Atlas_Id 53875
Location 6p23  [Link to chromosome band 6p23]
Location_base_pair Starts at 13615335 and ends at 13621712 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NOL7 (6p23) / ERVFRD-1 (6p24.2)NOL7 (6p23) / PLEKHJ1 (19p13.3)NOL7 (6p23) / USP22 (17p11.2)
RPS16 (19q13.2) / NOL7 (6p23)NOL7 6p23 / ERVFRD-1 6p24.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  del(6p) (loss of JARID2 and DTNBP1) in myeloid malignances


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(p23;p24) NOL7/ERVFRD-1


External links

Nomenclature
HGNC (Hugo)NOL7   21040
Cards
Entrez_Gene (NCBI)NOL7    nucleolar protein 7
AliasesC6orf90; PQBP3; RARG-1; dJ223E5.2
GeneCards (Weizmann)NOL7
Ensembl hg19 (Hinxton)ENSG00000225921 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225921 [Gene_View]  ENSG00000225921 [Sequence]  chr6:13615335-13621712 [Contig_View]  NOL7 [Vega]
ICGC DataPortalENSG00000225921
TCGA cBioPortalNOL7
AceView (NCBI)NOL7
Genatlas (Paris)NOL7
SOURCE (Princeton)NOL7
Genetics Home Reference (NIH)NOL7
Genomic and cartography
GoldenPath hg38 (UCSC)NOL7  -     chr6:13615335-13621712 +  6p23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOL7  -     6p23   [Description]    (hg19-Feb_2009)
GoldenPathNOL7 - 6p23 [CytoView hg19]  NOL7 - 6p23 [CytoView hg38]
ImmunoBaseENSG00000225921
genome Data Viewer NCBINOL7 [Mapview hg19]  
OMIM611533   
Gene and transcription
Genbank (Entrez)AF172066 AK075301 AL050299 BC023517 BC062683
RefSeq transcript (Entrez)NM_001317724 NM_016167
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOL7
Alternative Splicing GalleryENSG00000225921
Gene ExpressionNOL7 [ NCBI-GEO ]   NOL7 [ EBI - ARRAY_EXPRESS ]   NOL7 [ SEEK ]   NOL7 [ MEM ]
Gene Expression Viewer (FireBrowse)NOL7 [ Firebrowse - Broad ]
GenevisibleExpression of NOL7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51406
GTEX Portal (Tissue expression)NOL7
Human Protein AtlasENSG00000225921-NOL7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UMY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UMY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UMY1
Splice isoforms : SwissVarQ9UMY1
PhosPhoSitePlusQ9UMY1
Domains : Interpro (EBI)NOL7    NOL7_C   
Domain families : Pfam (Sanger)NUC129 (PF08157)   
Domain families : Pfam (NCBI)pfam08157   
Conserved Domain (NCBI)NOL7
Blocks (Seattle)NOL7
SuperfamilyQ9UMY1
Human Protein Atlas [tissue]ENSG00000225921-NOL7 [tissue]
Peptide AtlasQ9UMY1
HPRD17641
IPIIPI00007729   IPI00607836   
Protein Interaction databases
DIP (DOE-UCLA)Q9UMY1
IntAct (EBI)Q9UMY1
BioGRIDNOL7
STRING (EMBL)NOL7
ZODIACNOL7
Ontologies - Pathways
QuickGOQ9UMY1
Ontology : AmiGORNA binding  nucleolus  
Ontology : EGO-EBIRNA binding  nucleolus  
NDEx NetworkNOL7
Atlas of Cancer Signalling NetworkNOL7
Wikipedia pathwaysNOL7
Orthology - Evolution
OrthoDB51406
GeneTree (enSembl)ENSG00000225921
Phylogenetic Trees/Animal Genes : TreeFamNOL7
HOGENOMQ9UMY1
Homologs : HomoloGeneNOL7
Homology/Alignments : Family Browser (UCSC)NOL7
Gene fusions - Rearrangements
Fusion : MitelmanNOL7/ERVFRD-1 [6p23/6p24.2]  
Fusion PortalNOL7 6p23 ERVFRD-1 6p24.2 BRCA
Fusion : QuiverNOL7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOL7 [hg38]
dbVarNOL7
ClinVarNOL7
MonarchNOL7
1000_GenomesNOL7 
Exome Variant ServerNOL7
GNOMAD BrowserENSG00000225921
Varsome BrowserNOL7
Genomic Variants (DGV)NOL7 [DGVbeta]
DECIPHERNOL7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOL7 
Mutations
ICGC Data PortalNOL7 
TCGA Data PortalNOL7 
Broad Tumor PortalNOL7
OASIS PortalNOL7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOL7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNOL7
Mutations and Diseases : HGMDNOL7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOL7
DgiDB (Drug Gene Interaction Database)NOL7
DoCM (Curated mutations)NOL7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOL7 (select a term)
intoGenNOL7
Cancer3DNOL7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611533   
Orphanet
DisGeNETNOL7
MedgenNOL7
Genetic Testing Registry NOL7
NextProtQ9UMY1 [Medical]
GENETestsNOL7
Target ValidationNOL7
Huge Navigator NOL7 [HugePedia]
ClinGenNOL7
Clinical trials, drugs, therapy
MyCancerGenomeNOL7
Protein Interactions : CTD
Pharm GKB GenePA134881915
PharosQ9UMY1
Clinical trialNOL7
Miscellaneous
canSAR (ICR)NOL7 (select the gene name)
HarmonizomeNOL7
DataMed IndexNOL7
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNOL7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:29:10 CET 2021

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