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NOL7 (nucleolar protein 7)

Identity

Alias_namesC6orf90
PQBP3
chromosome 6 open reading frame 90
polyglutamine binding protein 3
nucleolar protein 7, 27kDa
Alias_symbol (synonym)NOP27
RARG-1
dJ223E5.2
Other alias
HGNC (Hugo) NOL7
LocusID (NCBI) 51406
Atlas_Id 53875
Location 6p23  [Link to chromosome band 6p23]
Location_base_pair Starts at 13615327 and ends at 13632470 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NOL7 (6p23) / ERVFRD-1 (6p24.2)NOL7 (6p23) / PLEKHJ1 (19p13.3)NOL7 (6p23) / USP22 (17p11.2)
RPS16 (19q13.2) / NOL7 (6p23)NOL7 6p23 / ERVFRD-1 6p24.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOL7   21040
Cards
Entrez_Gene (NCBI)NOL7  51406  nucleolar protein 7
AliasesC6orf90; PQBP3; RARG-1; dJ223E5.2
GeneCards (Weizmann)NOL7
Ensembl hg19 (Hinxton)ENSG00000225921 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225921 [Gene_View]  chr6:13615327-13632470 [Contig_View]  NOL7 [Vega]
ICGC DataPortalENSG00000225921
TCGA cBioPortalNOL7
AceView (NCBI)NOL7
Genatlas (Paris)NOL7
WikiGenes51406
SOURCE (Princeton)NOL7
Genetics Home Reference (NIH)NOL7
Genomic and cartography
GoldenPath hg38 (UCSC)NOL7  -     chr6:13615327-13632470 +  6p23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOL7  -     6p23   [Description]    (hg19-Feb_2009)
EnsemblNOL7 - 6p23 [CytoView hg19]  NOL7 - 6p23 [CytoView hg38]
Mapping of homologs : NCBINOL7 [Mapview hg19]  NOL7 [Mapview hg38]
OMIM611533   
Gene and transcription
Genbank (Entrez)AF172066 AK075301 AL050299 BC023517 BC062683
RefSeq transcript (Entrez)NM_001317724 NM_016167
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOL7
Cluster EST : UnigeneHs.708182 [ NCBI ]
CGAP (NCI)Hs.708182
Alternative Splicing GalleryENSG00000225921
Gene ExpressionNOL7 [ NCBI-GEO ]   NOL7 [ EBI - ARRAY_EXPRESS ]   NOL7 [ SEEK ]   NOL7 [ MEM ]
Gene Expression Viewer (FireBrowse)NOL7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51406
GTEX Portal (Tissue expression)NOL7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UMY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UMY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UMY1
Splice isoforms : SwissVarQ9UMY1
PhosPhoSitePlusQ9UMY1
Domains : Interpro (EBI)NOL7_C   
Domain families : Pfam (Sanger)NUC129 (PF08157)   
Domain families : Pfam (NCBI)pfam08157   
Conserved Domain (NCBI)NOL7
DMDM Disease mutations51406
Blocks (Seattle)NOL7
SuperfamilyQ9UMY1
Human Protein AtlasENSG00000225921
Peptide AtlasQ9UMY1
HPRD17641
IPIIPI00007729   IPI00607836   
Protein Interaction databases
DIP (DOE-UCLA)Q9UMY1
IntAct (EBI)Q9UMY1
FunCoupENSG00000225921
BioGRIDNOL7
STRING (EMBL)NOL7
ZODIACNOL7
Ontologies - Pathways
QuickGOQ9UMY1
Ontology : AmiGORNA binding  nucleus  nucleolus  mitochondrion  
Ontology : EGO-EBIRNA binding  nucleus  nucleolus  mitochondrion  
NDEx NetworkNOL7
Atlas of Cancer Signalling NetworkNOL7
Wikipedia pathwaysNOL7
Orthology - Evolution
OrthoDB51406
GeneTree (enSembl)ENSG00000225921
Phylogenetic Trees/Animal Genes : TreeFamNOL7
HOVERGENQ9UMY1
HOGENOMQ9UMY1
Homologs : HomoloGeneNOL7
Homology/Alignments : Family Browser (UCSC)NOL7
Gene fusions - Rearrangements
Fusion : MitelmanNOL7/ERVFRD-1 [6p23/6p24.2]  
Fusion: TCGANOL7 6p23 ERVFRD-1 6p24.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOL7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOL7
dbVarNOL7
ClinVarNOL7
1000_GenomesNOL7 
Exome Variant ServerNOL7
ExAC (Exome Aggregation Consortium)NOL7 (select the gene name)
Genetic variants : HAPMAP51406
Genomic Variants (DGV)NOL7 [DGVbeta]
DECIPHERNOL7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOL7 
Mutations
ICGC Data PortalNOL7 
TCGA Data PortalNOL7 
Broad Tumor PortalNOL7
OASIS PortalNOL7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOL7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOL7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOL7
DgiDB (Drug Gene Interaction Database)NOL7
DoCM (Curated mutations)NOL7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOL7 (select a term)
intoGenNOL7
Cancer3DNOL7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611533   
Orphanet
MedgenNOL7
Genetic Testing Registry NOL7
NextProtQ9UMY1 [Medical]
TSGene51406
GENETestsNOL7
Target ValidationNOL7
Huge Navigator NOL7 [HugePedia]
snp3D : Map Gene to Disease51406
BioCentury BCIQNOL7
ClinGenNOL7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51406
Chemical/Pharm GKB GenePA134881915
Clinical trialNOL7
Miscellaneous
canSAR (ICR)NOL7 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOL7
EVEXNOL7
GoPubMedNOL7
iHOPNOL7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:47:06 CEST 2017

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