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NOL8 (nucleolar protein 8)

Identity

Alias_namesC9orf34
chromosome 9 open reading frame 34
Alias_symbol (synonym)FLJ20736
Nop132
Other aliasNOP132
bA62C3.3
bA62C3.4
HGNC (Hugo) NOL8
LocusID (NCBI) 55035
Atlas_Id 70899
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 92297358 and ends at 92325594 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NOL8 (9q22.31) / SPTB (14q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOL8   23387
Cards
Entrez_Gene (NCBI)NOL8  55035  nucleolar protein 8
AliasesC9orf34; NOP132; bA62C3.3; bA62C3.4
GeneCards (Weizmann)NOL8
Ensembl hg19 (Hinxton)ENSG00000198000 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198000 [Gene_View]  chr9:92297358-92325594 [Contig_View]  NOL8 [Vega]
ICGC DataPortalENSG00000198000
TCGA cBioPortalNOL8
AceView (NCBI)NOL8
Genatlas (Paris)NOL8
WikiGenes55035
SOURCE (Princeton)NOL8
Genetics Home Reference (NIH)NOL8
Genomic and cartography
GoldenPath hg38 (UCSC)NOL8  -     chr9:92297358-92325594 -  9q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOL8  -     9q22.31   [Description]    (hg19-Feb_2009)
EnsemblNOL8 - 9q22.31 [CytoView hg19]  NOL8 - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBINOL8 [Mapview hg19]  NOL8 [Mapview hg38]
OMIM611534   
Gene and transcription
Genbank (Entrez)AB105104 AB109030 AK000743 AK001049 AK022755
RefSeq transcript (Entrez)NM_001256394 NM_001330722 NM_017948
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOL8
Cluster EST : UnigeneHs.442199 [ NCBI ]
CGAP (NCI)Hs.442199
Alternative Splicing GalleryENSG00000198000
Gene ExpressionNOL8 [ NCBI-GEO ]   NOL8 [ EBI - ARRAY_EXPRESS ]   NOL8 [ SEEK ]   NOL8 [ MEM ]
Gene Expression Viewer (FireBrowse)NOL8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55035
GTEX Portal (Tissue expression)NOL8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ76FK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ76FK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ76FK4
Splice isoforms : SwissVarQ76FK4
PhosPhoSitePlusQ76FK4
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)NOP8_RRM    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)NOL8
DMDM Disease mutations55035
Blocks (Seattle)NOL8
SuperfamilyQ76FK4
Human Protein AtlasENSG00000198000
Peptide AtlasQ76FK4
HPRD11397
IPIIPI00161085   IPI00645407   IPI00480054   IPI01014020   IPI00513947   IPI01013149   IPI01012406   IPI00940050   IPI00941146   IPI01013620   IPI01013607   IPI01014713   IPI01010743   IPI01015620   IPI01015201   IPI01012415   
Protein Interaction databases
DIP (DOE-UCLA)Q76FK4
IntAct (EBI)Q76FK4
FunCoupENSG00000198000
BioGRIDNOL8
STRING (EMBL)NOL8
ZODIACNOL8
Ontologies - Pathways
QuickGOQ76FK4
Ontology : AmiGORNA binding  protein binding  nucleolus  rRNA processing  protein localization to nucleolus  
Ontology : EGO-EBIRNA binding  protein binding  nucleolus  rRNA processing  protein localization to nucleolus  
NDEx NetworkNOL8
Atlas of Cancer Signalling NetworkNOL8
Wikipedia pathwaysNOL8
Orthology - Evolution
OrthoDB55035
GeneTree (enSembl)ENSG00000198000
Phylogenetic Trees/Animal Genes : TreeFamNOL8
HOVERGENQ76FK4
HOGENOMQ76FK4
Homologs : HomoloGeneNOL8
Homology/Alignments : Family Browser (UCSC)NOL8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOL8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOL8
dbVarNOL8
ClinVarNOL8
1000_GenomesNOL8 
Exome Variant ServerNOL8
ExAC (Exome Aggregation Consortium)NOL8 (select the gene name)
Genetic variants : HAPMAP55035
Genomic Variants (DGV)NOL8 [DGVbeta]
DECIPHERNOL8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOL8 
Mutations
ICGC Data PortalNOL8 
TCGA Data PortalNOL8 
Broad Tumor PortalNOL8
OASIS PortalNOL8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOL8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOL8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOL8
DgiDB (Drug Gene Interaction Database)NOL8
DoCM (Curated mutations)NOL8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOL8 (select a term)
intoGenNOL8
Cancer3DNOL8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611534   
Orphanet
MedgenNOL8
Genetic Testing Registry NOL8
NextProtQ76FK4 [Medical]
TSGene55035
GENETestsNOL8
Target ValidationNOL8
Huge Navigator NOL8 [HugePedia]
snp3D : Map Gene to Disease55035
BioCentury BCIQNOL8
ClinGenNOL8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55035
Chemical/Pharm GKB GenePA134918056
Clinical trialNOL8
Miscellaneous
canSAR (ICR)NOL8 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOL8
EVEXNOL8
GoPubMedNOL8
iHOPNOL8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:51 CEST 2017

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