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NOL9 (nucleolar protein 9)

Identity

Alias_symbol (synonym)FLJ23323
NET6
Grc3
Other alias
HGNC (Hugo) NOL9
LocusID (NCBI) 79707
Atlas_Id 70900
Location 1p36.31  [Link to chromosome band 1p36]
Location_base_pair Starts at 6521347 and ends at 6554598 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NOL9 (1p36.31) / ACOT7 (1p36.31)NOL9 (1p36.31) / DNAJC11 (1p36.31)NOL9 (1p36.31) / SUPT5H (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOL9   26265
Cards
Entrez_Gene (NCBI)NOL9  79707  nucleolar protein 9
AliasesGrc3; NET6
GeneCards (Weizmann)NOL9
Ensembl hg19 (Hinxton)ENSG00000162408 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162408 [Gene_View]  chr1:6521347-6554598 [Contig_View]  NOL9 [Vega]
ICGC DataPortalENSG00000162408
TCGA cBioPortalNOL9
AceView (NCBI)NOL9
Genatlas (Paris)NOL9
WikiGenes79707
SOURCE (Princeton)NOL9
Genetics Home Reference (NIH)NOL9
Genomic and cartography
GoldenPath hg38 (UCSC)NOL9  -     chr1:6521347-6554598 -  1p36.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOL9  -     1p36.31   [Description]    (hg19-Feb_2009)
EnsemblNOL9 - 1p36.31 [CytoView hg19]  NOL9 - 1p36.31 [CytoView hg38]
Mapping of homologs : NCBINOL9 [Mapview hg19]  NOL9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026976 AK091284 AK289653 BC009257 BC012439
RefSeq transcript (Entrez)NM_024654
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOL9
Cluster EST : UnigeneHs.59425 [ NCBI ]
CGAP (NCI)Hs.59425
Alternative Splicing GalleryENSG00000162408
Gene ExpressionNOL9 [ NCBI-GEO ]   NOL9 [ EBI - ARRAY_EXPRESS ]   NOL9 [ SEEK ]   NOL9 [ MEM ]
Gene Expression Viewer (FireBrowse)NOL9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79707
GTEX Portal (Tissue expression)NOL9
Human Protein AtlasENSG00000162408-NOL9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SY16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SY16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SY16
Splice isoforms : SwissVarQ5SY16
Catalytic activity : Enzyme2.7.1.- [ Enzyme-Expasy ]   2.7.1.-2.7.1.- [ IntEnz-EBI ]   2.7.1.- [ BRENDA ]   2.7.1.- [ KEGG ]   
PhosPhoSitePlusQ5SY16
Domains : Interpro (EBI)CLP1_P   
Domain families : Pfam (Sanger)CLP1_P (PF16575)   
Domain families : Pfam (NCBI)pfam16575   
Conserved Domain (NCBI)NOL9
DMDM Disease mutations79707
Blocks (Seattle)NOL9
SuperfamilyQ5SY16
Human Protein Atlas [tissue]ENSG00000162408-NOL9 [tissue]
Peptide AtlasQ5SY16
HPRD08667
IPIIPI00002902   
Protein Interaction databases
DIP (DOE-UCLA)Q5SY16
IntAct (EBI)Q5SY16
FunCoupENSG00000162408
BioGRIDNOL9
STRING (EMBL)NOL9
ZODIACNOL9
Ontologies - Pathways
QuickGOQ5SY16
Ontology : AmiGOcleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  maturation of 5.8S rRNA  RNA binding  protein binding  ATP binding  nucleoplasm  nucleolus  nucleolus  rRNA processing  membrane  phosphorylation  intermediate filament cytoskeleton  polynucleotide 5'-hydroxyl-kinase activity  
Ontology : EGO-EBIcleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  maturation of 5.8S rRNA  RNA binding  protein binding  ATP binding  nucleoplasm  nucleolus  nucleolus  rRNA processing  membrane  phosphorylation  intermediate filament cytoskeleton  polynucleotide 5'-hydroxyl-kinase activity  
NDEx NetworkNOL9
Atlas of Cancer Signalling NetworkNOL9
Wikipedia pathwaysNOL9
Orthology - Evolution
OrthoDB79707
GeneTree (enSembl)ENSG00000162408
Phylogenetic Trees/Animal Genes : TreeFamNOL9
HOVERGENQ5SY16
HOGENOMQ5SY16
Homologs : HomoloGeneNOL9
Homology/Alignments : Family Browser (UCSC)NOL9
Gene fusions - Rearrangements
Fusion: Tumor Portal NOL9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOL9
dbVarNOL9
ClinVarNOL9
1000_GenomesNOL9 
Exome Variant ServerNOL9
ExAC (Exome Aggregation Consortium)ENSG00000162408
GNOMAD BrowserENSG00000162408
Genetic variants : HAPMAP79707
Genomic Variants (DGV)NOL9 [DGVbeta]
DECIPHERNOL9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOL9 
Mutations
ICGC Data PortalNOL9 
TCGA Data PortalNOL9 
Broad Tumor PortalNOL9
OASIS PortalNOL9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOL9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOL9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOL9
DgiDB (Drug Gene Interaction Database)NOL9
DoCM (Curated mutations)NOL9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOL9 (select a term)
intoGenNOL9
Cancer3DNOL9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNOL9
Genetic Testing Registry NOL9
NextProtQ5SY16 [Medical]
TSGene79707
GENETestsNOL9
Target ValidationNOL9
Huge Navigator NOL9 [HugePedia]
snp3D : Map Gene to Disease79707
BioCentury BCIQNOL9
ClinGenNOL9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79707
Chemical/Pharm GKB GenePA142671256
Clinical trialNOL9
Miscellaneous
canSAR (ICR)NOL9 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOL9
EVEXNOL9
GoPubMedNOL9
iHOPNOL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:19:10 CET 2017

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