Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NOM1 (nucleolar protein with MIF4G domain 1)

Identity

Alias_namesregulatory subunit 113
C7orf3
Alias_symbol (synonym)SGD1
PPP1R113
Other alias
HGNC (Hugo) NOM1
LocusID (NCBI) 64434
Atlas_Id 53026
Location 7q36.3  [Link to chromosome band 7q36]
Location_base_pair Starts at 156742417 and ends at 156765876 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NOM1 (7q36.3) / EIF4A1 (17p13.1)NOM1 (7q36.3) / EIF4A2 (3q27.3)NOM1 (7q36.3) / EIF4A3 (17q25.3)
NOM1 (7q36.3) / NOM1 (7q36.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOM1   13244
Cards
Entrez_Gene (NCBI)NOM1  64434  nucleolar protein with MIF4G domain 1
AliasesC7orf3; PPP1R113; SGD1
GeneCards (Weizmann)NOM1
Ensembl hg19 (Hinxton)ENSG00000146909 [Gene_View]  chr7:156742417-156765876 [Contig_View]  NOM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000146909 [Gene_View]  chr7:156742417-156765876 [Contig_View]  NOM1 [Vega]
ICGC DataPortalENSG00000146909
TCGA cBioPortalNOM1
AceView (NCBI)NOM1
Genatlas (Paris)NOM1
WikiGenes64434
SOURCE (Princeton)NOM1
Genetics Home Reference (NIH)NOM1
Genomic and cartography
GoldenPath hg19 (UCSC)NOM1  -     chr7:156742417-156765876 +  7q36.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NOM1  -     7q36.3   [Description]    (hg38-Dec_2013)
EnsemblNOM1 - 7q36.3 [CytoView hg19]  NOM1 - 7q36.3 [CytoView hg38]
Mapping of homologs : NCBINOM1 [Mapview hg19]  NOM1 [Mapview hg38]
OMIM611269   
Gene and transcription
Genbank (Entrez)AK131362 AK308719 AY576779 BC007902 BC011187
RefSeq transcript (Entrez)NM_138400
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929334
Consensus coding sequences : CCDS (NCBI)NOM1
Cluster EST : UnigeneHs.15825 [ NCBI ]
CGAP (NCI)Hs.15825
Alternative Splicing GalleryENSG00000146909
Gene ExpressionNOM1 [ NCBI-GEO ]   NOM1 [ EBI - ARRAY_EXPRESS ]   NOM1 [ SEEK ]   NOM1 [ MEM ]
Gene Expression Viewer (FireBrowse)NOM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64434
GTEX Portal (Tissue expression)NOM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5C9Z4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5C9Z4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5C9Z4
Splice isoforms : SwissVarQ5C9Z4
PhosPhoSitePlusQ5C9Z4
Domaine pattern : Prosite (Expaxy)MI (PS51366)   
Domains : Interpro (EBI)ARM-type_fold    Initiation_fac_eIF4g_MI    MIF4-like    MIF4G-like_typ-3   
Domain families : Pfam (Sanger)MA3 (PF02847)    MIF4G (PF02854)   
Domain families : Pfam (NCBI)pfam02847    pfam02854   
Domain families : Smart (EMBL)MA3 (SM00544)  MIF4G (SM00543)  
Conserved Domain (NCBI)NOM1
DMDM Disease mutations64434
Blocks (Seattle)NOM1
SuperfamilyQ5C9Z4
Human Protein AtlasENSG00000146909
Peptide AtlasQ5C9Z4
HPRD18485
IPIIPI00145593   
Protein Interaction databases
DIP (DOE-UCLA)Q5C9Z4
IntAct (EBI)Q5C9Z4
FunCoupENSG00000146909
BioGRIDNOM1
STRING (EMBL)NOM1
ZODIACNOM1
Ontologies - Pathways
QuickGOQ5C9Z4
Ontology : AmiGORNA binding  protein binding  nucleus  nucleolus  biological_process  neurogenesis  ribosomal small subunit biogenesis  poly(A) RNA binding  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleolus  biological_process  neurogenesis  ribosomal small subunit biogenesis  poly(A) RNA binding  
NDEx NetworkNOM1
Atlas of Cancer Signalling NetworkNOM1
Wikipedia pathwaysNOM1
Orthology - Evolution
OrthoDB64434
GeneTree (enSembl)ENSG00000146909
Phylogenetic Trees/Animal Genes : TreeFamNOM1
HOVERGENQ5C9Z4
HOGENOMQ5C9Z4
Homologs : HomoloGeneNOM1
Homology/Alignments : Family Browser (UCSC)NOM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOM1
dbVarNOM1
ClinVarNOM1
1000_GenomesNOM1 
Exome Variant ServerNOM1
ExAC (Exome Aggregation Consortium)NOM1 (select the gene name)
Genetic variants : HAPMAP64434
Genomic Variants (DGV)NOM1 [DGVbeta]
DECIPHER (Syndromes)7:156742417-156765876  ENSG00000146909
CONAN: Copy Number AnalysisNOM1 
Mutations
ICGC Data PortalNOM1 
TCGA Data PortalNOM1 
Broad Tumor PortalNOM1
OASIS PortalNOM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOM1
DgiDB (Drug Gene Interaction Database)NOM1
DoCM (Curated mutations)NOM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOM1 (select a term)
intoGenNOM1
Cancer3DNOM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611269   
Orphanet
MedgenNOM1
Genetic Testing Registry NOM1
NextProtQ5C9Z4 [Medical]
TSGene64434
GENETestsNOM1
Huge Navigator NOM1 [HugePedia]
snp3D : Map Gene to Disease64434
BioCentury BCIQNOM1
ClinGenNOM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64434
Chemical/Pharm GKB GenePA25946
Clinical trialNOM1
Miscellaneous
canSAR (ICR)NOM1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOM1
EVEXNOM1
GoPubMedNOM1
iHOPNOM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:19:05 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.