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NOMO1 (NODAL modulator 1)

Identity

Alias_symbol (synonym)PM5
Other aliasNomo
HGNC (Hugo) NOMO1
LocusID (NCBI) 23420
Atlas_Id 56111
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 14833786 and ends at 14896157 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAPNS1 (19q13.12) / NOMO1 (16p13.11)ERBB2 (17q12) / NOMO1 (16p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOMO1   30060
Cards
Entrez_Gene (NCBI)NOMO1  23420  NODAL modulator 1
AliasesNomo; PM5
GeneCards (Weizmann)NOMO1
Ensembl hg19 (Hinxton)ENSG00000103512 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103512 [Gene_View]  chr16:14833786-14896157 [Contig_View]  NOMO1 [Vega]
ICGC DataPortalENSG00000103512
TCGA cBioPortalNOMO1
AceView (NCBI)NOMO1
Genatlas (Paris)NOMO1
WikiGenes23420
SOURCE (Princeton)NOMO1
Genetics Home Reference (NIH)NOMO1
Genomic and cartography
GoldenPath hg38 (UCSC)NOMO1  -     chr16:14833786-14896157 +  16p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOMO1  -     16p13.11   [Description]    (hg19-Feb_2009)
EnsemblNOMO1 - 16p13.11 [CytoView hg19]  NOMO1 - 16p13.11 [CytoView hg38]
Mapping of homologs : NCBINOMO1 [Mapview hg19]  NOMO1 [Mapview hg38]
OMIM609157   
Gene and transcription
Genbank (Entrez)AK125530 BC065535 BI459869 X57398
RefSeq transcript (Entrez)NM_014287
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187607
Consensus coding sequences : CCDS (NCBI)NOMO1
Cluster EST : UnigeneHs.743963 [ NCBI ]
CGAP (NCI)Hs.743963
Alternative Splicing GalleryENSG00000103512
Gene ExpressionNOMO1 [ NCBI-GEO ]   NOMO1 [ EBI - ARRAY_EXPRESS ]   NOMO1 [ SEEK ]   NOMO1 [ MEM ]
Gene Expression Viewer (FireBrowse)NOMO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23420
GTEX Portal (Tissue expression)NOMO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15155   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15155  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15155
Splice isoforms : SwissVarQ15155
PhosPhoSitePlusQ15155
Domains : Interpro (EBI)Carb-bd-like_fold    CarboxyPept-like_regulatory    CarboxyPept_regulatory_dom    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NOMO1
DMDM Disease mutations23420
Blocks (Seattle)NOMO1
SuperfamilyQ15155
Human Protein AtlasENSG00000103512
Peptide AtlasQ15155
HPRD11398
Protein Interaction databases
DIP (DOE-UCLA)Q15155
IntAct (EBI)Q15155
FunCoupENSG00000103512
BioGRIDNOMO1
STRING (EMBL)NOMO1
ZODIACNOMO1
Ontologies - Pathways
QuickGOQ15155
Ontology : AmiGOmolecular_function  cellular_component  biological_process  membrane  integral component of membrane  carbohydrate binding  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  membrane  integral component of membrane  carbohydrate binding  
NDEx NetworkNOMO1
Atlas of Cancer Signalling NetworkNOMO1
Wikipedia pathwaysNOMO1
Orthology - Evolution
OrthoDB23420
GeneTree (enSembl)ENSG00000103512
Phylogenetic Trees/Animal Genes : TreeFamNOMO1
HOVERGENQ15155
HOGENOMQ15155
Homologs : HomoloGeneNOMO1
Homology/Alignments : Family Browser (UCSC)NOMO1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOMO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOMO1
dbVarNOMO1
ClinVarNOMO1
1000_GenomesNOMO1 
Exome Variant ServerNOMO1
ExAC (Exome Aggregation Consortium)NOMO1 (select the gene name)
Genetic variants : HAPMAP23420
Genomic Variants (DGV)NOMO1 [DGVbeta]
DECIPHERNOMO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOMO1 
Mutations
ICGC Data PortalNOMO1 
TCGA Data PortalNOMO1 
Broad Tumor PortalNOMO1
OASIS PortalNOMO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOMO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOMO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOMO1
DgiDB (Drug Gene Interaction Database)NOMO1
DoCM (Curated mutations)NOMO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOMO1 (select a term)
intoGenNOMO1
Cancer3DNOMO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609157   
Orphanet
MedgenNOMO1
Genetic Testing Registry NOMO1
NextProtQ15155 [Medical]
TSGene23420
GENETestsNOMO1
Target ValidationNOMO1
Huge Navigator NOMO1 [HugePedia]
snp3D : Map Gene to Disease23420
BioCentury BCIQNOMO1
ClinGenNOMO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23420
Chemical/Pharm GKB GenePA134934458
Clinical trialNOMO1
Miscellaneous
canSAR (ICR)NOMO1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOMO1
EVEXNOMO1
GoPubMedNOMO1
iHOPNOMO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:47:07 CEST 2017

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