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NOMO2 (NODAL modulator 2)

Identity

Alias (NCBI)Nomo
PM5
HGNC (Hugo) NOMO2
HGNC Alias symbNOMO
PM5
LocusID (NCBI) 283820
Atlas_Id 70902
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 16232595 and ends at 16294811 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BHLHE41 (12p12.1) / NOMO2 (16p12.3)PHF3 (6q12) / NOMO2 (16p12.3)SNRPG (2p13.3) / NOMO2 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NOMO2   22652
Cards
Entrez_Gene (NCBI)NOMO2    NODAL modulator 2
AliasesNomo; PM5
GeneCards (Weizmann)NOMO2
Ensembl hg19 (Hinxton)ENSG00000185164 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185164 [Gene_View]  ENSG00000185164 [Sequence]  chr16:16232595-16294811 [Contig_View]  NOMO2 [Vega]
ICGC DataPortalENSG00000185164
TCGA cBioPortalNOMO2
AceView (NCBI)NOMO2
Genatlas (Paris)NOMO2
SOURCE (Princeton)NOMO2
Genetics Home Reference (NIH)NOMO2
Genomic and cartography
GoldenPath hg38 (UCSC)NOMO2  -     chr16:16232595-16294811 +  16p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOMO2  -     16p13.11   [Description]    (hg19-Feb_2009)
GoldenPathNOMO2 - 16p13.11 [CytoView hg19]  NOMO2 - 16p13.11 [CytoView hg38]
ImmunoBaseENSG00000185164
Genome Data Viewer NCBINOMO2 [Mapview hg19]  
OMIM609158   
Gene and transcription
Genbank (Entrez)AK225803 AL512687 AL832855 BC028389 BC041131
RefSeq transcript (Entrez)NM_001004060 NM_173614
Consensus coding sequences : CCDS (NCBI)NOMO2
Gene ExpressionNOMO2 [ NCBI-GEO ]   NOMO2 [ EBI - ARRAY_EXPRESS ]   NOMO2 [ SEEK ]   NOMO2 [ MEM ]
Gene Expression Viewer (FireBrowse)NOMO2 [ Firebrowse - Broad ]
GenevisibleExpression of NOMO2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283820
GTEX Portal (Tissue expression)NOMO2
Human Protein AtlasENSG00000185164-NOMO2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JPE7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JPE7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JPE7
PhosPhoSitePlusQ5JPE7
Domains : Interpro (EBI)Carb-bd-like_fold    CarboxyPept-like_regulatory    Prealbumin-like   
Domain families : Pfam (Sanger)SpaA (PF17802)   
Domain families : Pfam (NCBI)pfam17802   
Conserved Domain (NCBI)NOMO2
SuperfamilyQ5JPE7
AlphaFold pdb e-kbQ5JPE7   
Human Protein Atlas [tissue]ENSG00000185164-NOMO2 [tissue]
HPRD12375
Protein Interaction databases
DIP (DOE-UCLA)Q5JPE7
IntAct (EBI)Q5JPE7
BioGRIDNOMO2
STRING (EMBL)NOMO2
ZODIACNOMO2
Ontologies - Pathways
QuickGOQ5JPE7
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  integral component of membrane  carbohydrate binding  protein-containing complex  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  integral component of membrane  carbohydrate binding  protein-containing complex  
NDEx NetworkNOMO2
Atlas of Cancer Signalling NetworkNOMO2
Wikipedia pathwaysNOMO2
Orthology - Evolution
OrthoDB283820
GeneTree (enSembl)ENSG00000185164
Phylogenetic Trees/Animal Genes : TreeFamNOMO2
Homologs : HomoloGeneNOMO2
Homology/Alignments : Family Browser (UCSC)NOMO2
Gene fusions - Rearrangements
Fusion : QuiverNOMO2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOMO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOMO2
dbVarNOMO2
ClinVarNOMO2
MonarchNOMO2
1000_GenomesNOMO2 
Exome Variant ServerNOMO2
GNOMAD BrowserENSG00000185164
Varsome BrowserNOMO2
ACMGNOMO2 variants
VarityQ5JPE7
Genomic Variants (DGV)NOMO2 [DGVbeta]
DECIPHERNOMO2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOMO2 
Mutations
ICGC Data PortalNOMO2 
TCGA Data PortalNOMO2 
Broad Tumor PortalNOMO2
OASIS PortalNOMO2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOMO2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNOMO2
Mutations and Diseases : HGMDNOMO2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNOMO2
DgiDB (Drug Gene Interaction Database)NOMO2
DoCM (Curated mutations)NOMO2
CIViC (Clinical Interpretations of Variants in Cancer)NOMO2
Cancer3DNOMO2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609158   
Orphanet
DisGeNETNOMO2
MedgenNOMO2
Genetic Testing Registry NOMO2
NextProtQ5JPE7 [Medical]
GENETestsNOMO2
Target ValidationNOMO2
Huge Navigator NOMO2 [HugePedia]
ClinGenNOMO2
Clinical trials, drugs, therapy
MyCancerGenomeNOMO2
Protein Interactions : CTDNOMO2
Pharm GKB GenePA134958124
PharosQ5JPE7
Clinical trialNOMO2
Miscellaneous
canSAR (ICR)NOMO2
HarmonizomeNOMO2
DataMed IndexNOMO2
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNOMO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:12:54 CEST 2021

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