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NOMO2 (NODAL modulator 2)

Identity

Alias_symbol (synonym)NOMO
PM5
Other aliasNomo
HGNC (Hugo) NOMO2
LocusID (NCBI) 283820
Atlas_Id 70902
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 18499924 and ends at 18562112 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BHLHE41 (12p12.1) / NOMO2 (16p12.3)PHF3 (6q12) / NOMO2 (16p12.3)SNRPG (2p13.3) / NOMO2 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOMO2   22652
Cards
Entrez_Gene (NCBI)NOMO2  283820  NODAL modulator 2
AliasesNomo; PM5
GeneCards (Weizmann)NOMO2
Ensembl hg19 (Hinxton)ENSG00000185164 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185164 [Gene_View]  chr16:18499924-18562112 [Contig_View]  NOMO2 [Vega]
ICGC DataPortalENSG00000185164
TCGA cBioPortalNOMO2
AceView (NCBI)NOMO2
Genatlas (Paris)NOMO2
WikiGenes283820
SOURCE (Princeton)NOMO2
Genetics Home Reference (NIH)NOMO2
Genomic and cartography
GoldenPath hg38 (UCSC)NOMO2  -     chr16:18499924-18562112 -  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOMO2  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblNOMO2 - 16p12.3 [CytoView hg19]  NOMO2 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBINOMO2 [Mapview hg19]  NOMO2 [Mapview hg38]
OMIM609158   
Gene and transcription
Genbank (Entrez)AK225803 AL512687 AL832855 BC028389 BC041131
RefSeq transcript (Entrez)NM_001004060 NM_173614
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOMO2
Cluster EST : UnigeneHs.460141 [ NCBI ]
CGAP (NCI)Hs.460141
Alternative Splicing GalleryENSG00000185164
Gene ExpressionNOMO2 [ NCBI-GEO ]   NOMO2 [ EBI - ARRAY_EXPRESS ]   NOMO2 [ SEEK ]   NOMO2 [ MEM ]
Gene Expression Viewer (FireBrowse)NOMO2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283820
GTEX Portal (Tissue expression)NOMO2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JPE7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JPE7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JPE7
Splice isoforms : SwissVarQ5JPE7
PhosPhoSitePlusQ5JPE7
Domains : Interpro (EBI)Carb-bd-like_fold    CarboxyPept-like_regulatory    CarboxyPept_regulatory_dom    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NOMO2
DMDM Disease mutations283820
Blocks (Seattle)NOMO2
SuperfamilyQ5JPE7
Human Protein AtlasENSG00000185164
Peptide AtlasQ5JPE7
HPRD12375
IPIIPI00465432   IPI00333985   IPI01013036   
Protein Interaction databases
DIP (DOE-UCLA)Q5JPE7
IntAct (EBI)Q5JPE7
FunCoupENSG00000185164
BioGRIDNOMO2
STRING (EMBL)NOMO2
ZODIACNOMO2
Ontologies - Pathways
QuickGOQ5JPE7
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  integral component of membrane  carbohydrate binding  protein destabilization  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  integral component of membrane  carbohydrate binding  protein destabilization  
NDEx NetworkNOMO2
Atlas of Cancer Signalling NetworkNOMO2
Wikipedia pathwaysNOMO2
Orthology - Evolution
OrthoDB283820
GeneTree (enSembl)ENSG00000185164
Phylogenetic Trees/Animal Genes : TreeFamNOMO2
HOVERGENQ5JPE7
HOGENOMQ5JPE7
Homologs : HomoloGeneNOMO2
Homology/Alignments : Family Browser (UCSC)NOMO2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOMO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOMO2
dbVarNOMO2
ClinVarNOMO2
1000_GenomesNOMO2 
Exome Variant ServerNOMO2
ExAC (Exome Aggregation Consortium)NOMO2 (select the gene name)
Genetic variants : HAPMAP283820
Genomic Variants (DGV)NOMO2 [DGVbeta]
DECIPHERNOMO2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOMO2 
Mutations
ICGC Data PortalNOMO2 
TCGA Data PortalNOMO2 
Broad Tumor PortalNOMO2
OASIS PortalNOMO2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOMO2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOMO2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOMO2
DgiDB (Drug Gene Interaction Database)NOMO2
DoCM (Curated mutations)NOMO2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOMO2 (select a term)
intoGenNOMO2
Cancer3DNOMO2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609158   
Orphanet
MedgenNOMO2
Genetic Testing Registry NOMO2
NextProtQ5JPE7 [Medical]
TSGene283820
GENETestsNOMO2
Target ValidationNOMO2
Huge Navigator NOMO2 [HugePedia]
snp3D : Map Gene to Disease283820
BioCentury BCIQNOMO2
ClinGenNOMO2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283820
Chemical/Pharm GKB GenePA134958124
Clinical trialNOMO2
Miscellaneous
canSAR (ICR)NOMO2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOMO2
EVEXNOMO2
GoPubMedNOMO2
iHOPNOMO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:32:52 CEST 2017

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