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NOP10 (NOP10 ribonucleoprotein)

Identity

Alias_namesNOLA3
nucleolar protein family A, member 3 (H/ACA small nucleolar RNPs)
NOP10 ribonucleoprotein homolog (yeast)
Alias_symbol (synonym)NOP10P
MGC70651
Other aliasDKCB1
HGNC (Hugo) NOP10
LocusID (NCBI) 55505
Atlas_Id 70904
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 34633917 and ends at 34635362 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NOP10 (15q14) / NOP10 (15q14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOP10   14378
LRG (Locus Reference Genomic)LRG_345
Cards
Entrez_Gene (NCBI)NOP10  55505  NOP10 ribonucleoprotein
AliasesDKCB1; NOLA3; NOP10P
GeneCards (Weizmann)NOP10
Ensembl hg19 (Hinxton)ENSG00000182117 [Gene_View]  chr15:34633917-34635362 [Contig_View]  NOP10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182117 [Gene_View]  chr15:34633917-34635362 [Contig_View]  NOP10 [Vega]
ICGC DataPortalENSG00000182117
TCGA cBioPortalNOP10
AceView (NCBI)NOP10
Genatlas (Paris)NOP10
WikiGenes55505
SOURCE (Princeton)NOP10
Genetics Home Reference (NIH)NOP10
Genomic and cartography
GoldenPath hg19 (UCSC)NOP10  -     chr15:34633917-34635362 -  15q14   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NOP10  -     15q14   [Description]    (hg38-Dec_2013)
EnsemblNOP10 - 15q14 [CytoView hg19]  NOP10 - 15q14 [CytoView hg38]
Mapping of homologs : NCBINOP10 [Mapview hg19]  NOP10 [Mapview hg38]
OMIM224230   606471   
Gene and transcription
Genbank (Entrez)AB043104 BC008886 BC063023 BM554889 BQ218536
RefSeq transcript (Entrez)NM_018648
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_011562 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)NOP10
Cluster EST : UnigeneHs.14317 [ NCBI ]
CGAP (NCI)Hs.14317
Alternative Splicing GalleryENSG00000182117
Gene ExpressionNOP10 [ NCBI-GEO ]   NOP10 [ EBI - ARRAY_EXPRESS ]   NOP10 [ SEEK ]   NOP10 [ MEM ]
Gene Expression Viewer (FireBrowse)NOP10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55505
GTEX Portal (Tissue expression)NOP10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPE3
Splice isoforms : SwissVarQ9NPE3
PhosPhoSitePlusQ9NPE3
Domains : Interpro (EBI)H/ACA_rnp_Nop10   
Domain families : Pfam (Sanger)Nop10p (PF04135)   
Domain families : Pfam (NCBI)pfam04135   
Conserved Domain (NCBI)NOP10
DMDM Disease mutations55505
Blocks (Seattle)NOP10
SuperfamilyQ9NPE3
Human Protein AtlasENSG00000182117
Peptide AtlasQ9NPE3
HPRD07571
IPIIPI00032853   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPE3
IntAct (EBI)Q9NPE3
FunCoupENSG00000182117
BioGRIDNOP10
STRING (EMBL)NOP10
ZODIACNOP10
Ontologies - Pathways
QuickGOQ9NPE3
Ontology : AmiGOpseudouridine synthesis  protein binding  nucleolus  small nucleolar ribonucleoprotein complex  rRNA processing  Cajal body  snoRNA binding  box H/ACA RNP complex  
Ontology : EGO-EBIpseudouridine synthesis  protein binding  nucleolus  small nucleolar ribonucleoprotein complex  rRNA processing  Cajal body  snoRNA binding  box H/ACA RNP complex  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkNOP10
Atlas of Cancer Signalling NetworkNOP10
Wikipedia pathwaysNOP10
Orthology - Evolution
OrthoDB55505
GeneTree (enSembl)ENSG00000182117
Phylogenetic Trees/Animal Genes : TreeFamNOP10
HOVERGENQ9NPE3
HOGENOMQ9NPE3
Homologs : HomoloGeneNOP10
Homology/Alignments : Family Browser (UCSC)NOP10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOP10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOP10
dbVarNOP10
ClinVarNOP10
1000_GenomesNOP10 
Exome Variant ServerNOP10
ExAC (Exome Aggregation Consortium)NOP10 (select the gene name)
Genetic variants : HAPMAP55505
Genomic Variants (DGV)NOP10 [DGVbeta]
DECIPHER (Syndromes)15:34633917-34635362  ENSG00000182117
CONAN: Copy Number AnalysisNOP10 
Mutations
ICGC Data PortalNOP10 
TCGA Data PortalNOP10 
Broad Tumor PortalNOP10
OASIS PortalNOP10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOP10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOP10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch NOP10
DgiDB (Drug Gene Interaction Database)NOP10
DoCM (Curated mutations)NOP10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOP10 (select a term)
intoGenNOP10
Cancer3DNOP10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM224230    606471   
Orphanet477   
MedgenNOP10
Genetic Testing Registry NOP10
NextProtQ9NPE3 [Medical]
TSGene55505
GENETestsNOP10
Huge Navigator NOP10 [HugePedia]
snp3D : Map Gene to Disease55505
BioCentury BCIQNOP10
ClinGenNOP10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55505
Chemical/Pharm GKB GenePA164723973
Clinical trialNOP10
Miscellaneous
canSAR (ICR)NOP10 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOP10
EVEXNOP10
GoPubMedNOP10
iHOPNOP10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:09 CET 2017

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