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NOP10 (NOP10 ribonucleoprotein)

Identity

Alias_namesNOLA3
nucleolar protein family A, member 3 (H/ACA small nucleolar RNPs)
NOP10 ribonucleoprotein homolog (yeast)
Alias_symbol (synonym)NOP10P
MGC70651
Other aliasDKCB1
HGNC (Hugo) NOP10
LocusID (NCBI) 55505
Atlas_Id 70904
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 34341716 and ends at 34343161 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NOP10 (15q14) / NOP10 (15q14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOP10   14378
LRG (Locus Reference Genomic)LRG_345
Cards
Entrez_Gene (NCBI)NOP10  55505  NOP10 ribonucleoprotein
AliasesDKCB1; NOLA3; NOP10P
GeneCards (Weizmann)NOP10
Ensembl hg19 (Hinxton)ENSG00000182117 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182117 [Gene_View]  chr15:34341716-34343161 [Contig_View]  NOP10 [Vega]
ICGC DataPortalENSG00000182117
TCGA cBioPortalNOP10
AceView (NCBI)NOP10
Genatlas (Paris)NOP10
WikiGenes55505
SOURCE (Princeton)NOP10
Genetics Home Reference (NIH)NOP10
Genomic and cartography
GoldenPath hg38 (UCSC)NOP10  -     chr15:34341716-34343161 -  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOP10  -     15q14   [Description]    (hg19-Feb_2009)
EnsemblNOP10 - 15q14 [CytoView hg19]  NOP10 - 15q14 [CytoView hg38]
Mapping of homologs : NCBINOP10 [Mapview hg19]  NOP10 [Mapview hg38]
OMIM224230   606471   
Gene and transcription
Genbank (Entrez)AB043104 BC008886 BC063023 BM554889 BQ218536
RefSeq transcript (Entrez)NM_018648
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOP10
Cluster EST : UnigeneHs.14317 [ NCBI ]
CGAP (NCI)Hs.14317
Alternative Splicing GalleryENSG00000182117
Gene ExpressionNOP10 [ NCBI-GEO ]   NOP10 [ EBI - ARRAY_EXPRESS ]   NOP10 [ SEEK ]   NOP10 [ MEM ]
Gene Expression Viewer (FireBrowse)NOP10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55505
GTEX Portal (Tissue expression)NOP10
Human Protein AtlasENSG00000182117-NOP10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPE3
Splice isoforms : SwissVarQ9NPE3
PhosPhoSitePlusQ9NPE3
Domains : Interpro (EBI)H/ACA_rnp_Nop10   
Domain families : Pfam (Sanger)Nop10p (PF04135)   
Domain families : Pfam (NCBI)pfam04135   
Conserved Domain (NCBI)NOP10
DMDM Disease mutations55505
Blocks (Seattle)NOP10
SuperfamilyQ9NPE3
Human Protein Atlas [tissue]ENSG00000182117-NOP10 [tissue]
Peptide AtlasQ9NPE3
HPRD07571
IPIIPI00032853   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPE3
IntAct (EBI)Q9NPE3
FunCoupENSG00000182117
BioGRIDNOP10
STRING (EMBL)NOP10
ZODIACNOP10
Ontologies - Pathways
QuickGOQ9NPE3
Ontology : AmiGOsnoRNA guided rRNA pseudouridine synthesis  pseudouridine synthesis  protein binding  nucleoplasm  telomerase holoenzyme complex  telomerase holoenzyme complex  small nucleolar ribonucleoprotein complex  telomere maintenance via telomerase  nuclear body  rRNA pseudouridine synthesis  rRNA pseudouridine synthesis  snRNA pseudouridine synthesis  box H/ACA snoRNP complex  box H/ACA snoRNP complex  box H/ACA snoRNA binding  telomerase RNA binding  telomerase RNA binding  box H/ACA scaRNP complex  box H/ACA telomerase RNP complex  box H/ACA telomerase RNP complex  positive regulation of telomerase RNA localization to Cajal body  
Ontology : EGO-EBIsnoRNA guided rRNA pseudouridine synthesis  pseudouridine synthesis  protein binding  nucleoplasm  telomerase holoenzyme complex  telomerase holoenzyme complex  small nucleolar ribonucleoprotein complex  telomere maintenance via telomerase  nuclear body  rRNA pseudouridine synthesis  rRNA pseudouridine synthesis  snRNA pseudouridine synthesis  box H/ACA snoRNP complex  box H/ACA snoRNP complex  box H/ACA snoRNA binding  telomerase RNA binding  telomerase RNA binding  box H/ACA scaRNP complex  box H/ACA telomerase RNP complex  box H/ACA telomerase RNP complex  positive regulation of telomerase RNA localization to Cajal body  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkNOP10
Atlas of Cancer Signalling NetworkNOP10
Wikipedia pathwaysNOP10
Orthology - Evolution
OrthoDB55505
GeneTree (enSembl)ENSG00000182117
Phylogenetic Trees/Animal Genes : TreeFamNOP10
HOVERGENQ9NPE3
HOGENOMQ9NPE3
Homologs : HomoloGeneNOP10
Homology/Alignments : Family Browser (UCSC)NOP10
Gene fusions - Rearrangements
Tumor Fusion PortalNOP10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOP10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOP10
dbVarNOP10
ClinVarNOP10
1000_GenomesNOP10 
Exome Variant ServerNOP10
ExAC (Exome Aggregation Consortium)ENSG00000182117
GNOMAD BrowserENSG00000182117
Genetic variants : HAPMAP55505
Genomic Variants (DGV)NOP10 [DGVbeta]
DECIPHERNOP10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOP10 
Mutations
ICGC Data PortalNOP10 
TCGA Data PortalNOP10 
Broad Tumor PortalNOP10
OASIS PortalNOP10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOP10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOP10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch NOP10
DgiDB (Drug Gene Interaction Database)NOP10
DoCM (Curated mutations)NOP10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOP10 (select a term)
intoGenNOP10
Cancer3DNOP10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM224230    606471   
Orphanet477   
DisGeNETNOP10
MedgenNOP10
Genetic Testing Registry NOP10
NextProtQ9NPE3 [Medical]
TSGene55505
GENETestsNOP10
Target ValidationNOP10
Huge Navigator NOP10 [HugePedia]
snp3D : Map Gene to Disease55505
BioCentury BCIQNOP10
ClinGenNOP10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55505
Chemical/Pharm GKB GenePA164723973
Clinical trialNOP10
Miscellaneous
canSAR (ICR)NOP10 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOP10
EVEXNOP10
GoPubMedNOP10
iHOPNOP10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:03:29 CET 2017

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