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NOP10 (NOP10 ribonucleoprotein)

Identity

Alias (NCBI)DKCB1
NOLA3
NOP10P
HGNC (Hugo) NOP10
HGNC Alias symbNOP10P
MGC70651
HGNC Alias namehomolog of yeast Nop10p
HGNC Previous nameNOLA3
HGNC Previous namenucleolar protein family A, member 3 (H/ACA small nucleolar RNPs)
 NOP10 ribonucleoprotein homolog (yeast)
LocusID (NCBI) 55505
Atlas_Id 70904
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 34341721 and ends at 34343136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NOP10 (15q14) / NOP10 (15q14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NOP10   14378
LRG (Locus Reference Genomic)LRG_345
Cards
Entrez_Gene (NCBI)NOP10    NOP10 ribonucleoprotein
AliasesDKCB1; NOLA3; NOP10P
GeneCards (Weizmann)NOP10
Ensembl hg19 (Hinxton)ENSG00000182117 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182117 [Gene_View]  ENSG00000182117 [Sequence]  chr15:34341721-34343136 [Contig_View]  NOP10 [Vega]
ICGC DataPortalENSG00000182117
TCGA cBioPortalNOP10
AceView (NCBI)NOP10
Genatlas (Paris)NOP10
SOURCE (Princeton)NOP10
Genetics Home Reference (NIH)NOP10
Genomic and cartography
GoldenPath hg38 (UCSC)NOP10  -     chr15:34341721-34343136 -  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOP10  -     15q14   [Description]    (hg19-Feb_2009)
GoldenPathNOP10 - 15q14 [CytoView hg19]  NOP10 - 15q14 [CytoView hg38]
ImmunoBaseENSG00000182117
Genome Data Viewer NCBINOP10 [Mapview hg19]  
OMIM224230   606471   
Gene and transcription
Genbank (Entrez)AB043104 BC008886 BC063023 BM554889 BQ218536
RefSeq transcript (Entrez)NM_018648
Consensus coding sequences : CCDS (NCBI)NOP10
Gene ExpressionNOP10 [ NCBI-GEO ]   NOP10 [ EBI - ARRAY_EXPRESS ]   NOP10 [ SEEK ]   NOP10 [ MEM ]
Gene Expression Viewer (FireBrowse)NOP10 [ Firebrowse - Broad ]
GenevisibleExpression of NOP10 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55505
GTEX Portal (Tissue expression)NOP10
Human Protein AtlasENSG00000182117-NOP10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPE3
PhosPhoSitePlusQ9NPE3
Domains : Interpro (EBI)H/ACA_rnp_Nop10    H/ACA_rnp_Nop10_sf   
Domain families : Pfam (Sanger)Nop10p (PF04135)   
Domain families : Pfam (NCBI)pfam04135   
Conserved Domain (NCBI)NOP10
SuperfamilyQ9NPE3
AlphaFold pdb e-kbQ9NPE3   
Human Protein Atlas [tissue]ENSG00000182117-NOP10 [tissue]
HPRD07571
Protein Interaction databases
DIP (DOE-UCLA)Q9NPE3
IntAct (EBI)Q9NPE3
BioGRIDNOP10
STRING (EMBL)NOP10
ZODIACNOP10
Ontologies - Pathways
QuickGOQ9NPE3
Ontology : AmiGOsnoRNA guided rRNA pseudouridine synthesis  pseudouridine synthesis  RNA binding  protein binding  nucleoplasm  telomerase holoenzyme complex  telomerase holoenzyme complex  sno(s)RNA-containing ribonucleoprotein complex  telomere maintenance via telomerase  telomere maintenance via telomerase  nuclear body  rRNA pseudouridine synthesis  rRNA pseudouridine synthesis  snRNA pseudouridine synthesis  box H/ACA snoRNP complex  box H/ACA snoRNP complex  box H/ACA snoRNP complex  box H/ACA snoRNA binding  box H/ACA snoRNA binding  telomerase RNA binding  telomerase RNA binding  telomerase RNA binding  box H/ACA scaRNP complex  box H/ACA telomerase RNP complex  box H/ACA telomerase RNP complex  box H/ACA telomerase RNP complex  positive regulation of telomerase RNA localization to Cajal body  
Ontology : EGO-EBIsnoRNA guided rRNA pseudouridine synthesis  pseudouridine synthesis  RNA binding  protein binding  nucleoplasm  telomerase holoenzyme complex  telomerase holoenzyme complex  sno(s)RNA-containing ribonucleoprotein complex  telomere maintenance via telomerase  telomere maintenance via telomerase  nuclear body  rRNA pseudouridine synthesis  rRNA pseudouridine synthesis  snRNA pseudouridine synthesis  box H/ACA snoRNP complex  box H/ACA snoRNP complex  box H/ACA snoRNP complex  box H/ACA snoRNA binding  box H/ACA snoRNA binding  telomerase RNA binding  telomerase RNA binding  telomerase RNA binding  box H/ACA scaRNP complex  box H/ACA telomerase RNP complex  box H/ACA telomerase RNP complex  box H/ACA telomerase RNP complex  positive regulation of telomerase RNA localization to Cajal body  
NDEx NetworkNOP10
Atlas of Cancer Signalling NetworkNOP10
Wikipedia pathwaysNOP10
Orthology - Evolution
OrthoDB55505
GeneTree (enSembl)ENSG00000182117
Phylogenetic Trees/Animal Genes : TreeFamNOP10
Homologs : HomoloGeneNOP10
Homology/Alignments : Family Browser (UCSC)NOP10
Gene fusions - Rearrangements
Fusion : QuiverNOP10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOP10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOP10
dbVarNOP10
ClinVarNOP10
MonarchNOP10
1000_GenomesNOP10 
Exome Variant ServerNOP10
GNOMAD BrowserENSG00000182117
Varsome BrowserNOP10
ACMGNOP10 variants
VarityQ9NPE3
Genomic Variants (DGV)NOP10 [DGVbeta]
DECIPHERNOP10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOP10 
Mutations
ICGC Data PortalNOP10 
TCGA Data PortalNOP10 
Broad Tumor PortalNOP10
OASIS PortalNOP10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOP10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNOP10
Mutations and Diseases : HGMDNOP10
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNOP10
DgiDB (Drug Gene Interaction Database)NOP10
DoCM (Curated mutations)NOP10
CIViC (Clinical Interpretations of Variants in Cancer)NOP10
Cancer3DNOP10
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM224230    606471   
Orphanet477   
DisGeNETNOP10
MedgenNOP10
Genetic Testing Registry NOP10
NextProtQ9NPE3 [Medical]
GENETestsNOP10
Target ValidationNOP10
Huge Navigator NOP10 [HugePedia]
ClinGenNOP10
Clinical trials, drugs, therapy
MyCancerGenomeNOP10
Protein Interactions : CTDNOP10
Pharm GKB GenePA164723973
PharosQ9NPE3
Clinical trialNOP10
Miscellaneous
canSAR (ICR)NOP10
HarmonizomeNOP10
DataMed IndexNOP10
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNOP10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:12:55 CEST 2021

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