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NOP14 (NOP14 nucleolar protein)

Identity

Alias_namesC4orf9
NOL14
chromosome 4 open reading frame 9
nucleolar protein 14
nucleolar protein 14 homolog (yeast)
NOP14 nucleolar protein homolog (yeast)
Alias_symbol (synonym)RES4-25
UTP2
Other aliasRES425
HGNC (Hugo) NOP14
LocusID (NCBI) 8602
Atlas_Id 55865
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 2937937 and ends at 2963506 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOP14   16821
Cards
Entrez_Gene (NCBI)NOP14  8602  NOP14 nucleolar protein
AliasesC4orf9; NOL14; RES4-25; RES425; 
UTP2
GeneCards (Weizmann)NOP14
Ensembl hg19 (Hinxton)ENSG00000087269 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000087269 [Gene_View]  chr4:2937937-2963506 [Contig_View]  NOP14 [Vega]
ICGC DataPortalENSG00000087269
TCGA cBioPortalNOP14
AceView (NCBI)NOP14
Genatlas (Paris)NOP14
WikiGenes8602
SOURCE (Princeton)NOP14
Genetics Home Reference (NIH)NOP14
Genomic and cartography
GoldenPath hg38 (UCSC)NOP14  -     chr4:2937937-2963506 -  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOP14  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblNOP14 - 4p16.3 [CytoView hg19]  NOP14 - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBINOP14 [Mapview hg19]  NOP14 [Mapview hg38]
OMIM611526   
Gene and transcription
Genbank (Entrez)AB000467 AF040965 AK024755 AK025692 AK292939
RefSeq transcript (Entrez)NM_001291978 NM_001291979 NM_003703
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOP14
Cluster EST : UnigeneHs.627133 [ NCBI ]
CGAP (NCI)Hs.627133
Alternative Splicing GalleryENSG00000087269
Gene ExpressionNOP14 [ NCBI-GEO ]   NOP14 [ EBI - ARRAY_EXPRESS ]   NOP14 [ SEEK ]   NOP14 [ MEM ]
Gene Expression Viewer (FireBrowse)NOP14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8602
GTEX Portal (Tissue expression)NOP14
Human Protein AtlasENSG00000087269-NOP14 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78316   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78316  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78316
Splice isoforms : SwissVarP78316
PhosPhoSitePlusP78316
Domains : Interpro (EBI)Nop14   
Domain families : Pfam (Sanger)Nop14 (PF04147)   
Domain families : Pfam (NCBI)pfam04147   
Conserved Domain (NCBI)NOP14
DMDM Disease mutations8602
Blocks (Seattle)NOP14
SuperfamilyP78316
Human Protein Atlas [tissue]ENSG00000087269-NOP14 [tissue]
Peptide AtlasP78316
HPRD12827
IPIIPI00022613   IPI00743803   IPI00968217   
Protein Interaction databases
DIP (DOE-UCLA)P78316
IntAct (EBI)P78316
FunCoupENSG00000087269
BioGRIDNOP14
STRING (EMBL)NOP14
ZODIACNOP14
Ontologies - Pathways
QuickGOP78316
Ontology : AmiGOendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  nucleus  nucleoplasm  nucleolus  nucleolus  nucleolus  mitochondrion  rRNA processing  rRNA processing  membrane  enzyme binding  maturation of SSU-rRNA  snoRNA binding  90S preribosome  Noc4p-Nop14p complex  Noc4p-Nop14p complex  small-subunit processome  small-subunit processome  ribosomal small subunit biogenesis  
Ontology : EGO-EBIendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  nucleus  nucleoplasm  nucleolus  nucleolus  nucleolus  mitochondrion  rRNA processing  rRNA processing  membrane  enzyme binding  maturation of SSU-rRNA  snoRNA binding  90S preribosome  Noc4p-Nop14p complex  Noc4p-Nop14p complex  small-subunit processome  small-subunit processome  ribosomal small subunit biogenesis  
NDEx NetworkNOP14
Atlas of Cancer Signalling NetworkNOP14
Wikipedia pathwaysNOP14
Orthology - Evolution
OrthoDB8602
GeneTree (enSembl)ENSG00000087269
Phylogenetic Trees/Animal Genes : TreeFamNOP14
HOVERGENP78316
HOGENOMP78316
Homologs : HomoloGeneNOP14
Homology/Alignments : Family Browser (UCSC)NOP14
Gene fusions - Rearrangements
Fusion: Tumor Portal NOP14
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOP14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOP14
dbVarNOP14
ClinVarNOP14
1000_GenomesNOP14 
Exome Variant ServerNOP14
ExAC (Exome Aggregation Consortium)ENSG00000087269
GNOMAD BrowserENSG00000087269
Genetic variants : HAPMAP8602
Genomic Variants (DGV)NOP14 [DGVbeta]
DECIPHERNOP14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOP14 
Mutations
ICGC Data PortalNOP14 
TCGA Data PortalNOP14 
Broad Tumor PortalNOP14
OASIS PortalNOP14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOP14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOP14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOP14
DgiDB (Drug Gene Interaction Database)NOP14
DoCM (Curated mutations)NOP14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOP14 (select a term)
intoGenNOP14
Cancer3DNOP14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611526   
Orphanet
MedgenNOP14
Genetic Testing Registry NOP14
NextProtP78316 [Medical]
TSGene8602
GENETestsNOP14
Target ValidationNOP14
Huge Navigator NOP14 [HugePedia]
snp3D : Map Gene to Disease8602
BioCentury BCIQNOP14
ClinGenNOP14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8602
Chemical/Pharm GKB GenePA164723982
Clinical trialNOP14
Miscellaneous
canSAR (ICR)NOP14 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOP14
EVEXNOP14
GoPubMedNOP14
iHOPNOP14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:02:54 CET 2017

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