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NOP16 (NOP16 nucleolar protein)

Identity

Alias (NCBI)HSPC111
HSPC185
HGNC (Hugo) NOP16
HGNC Alias symbHSPC111
HSPC185
LOC51491
HGNC Alias namehypothetical protein HSPC111
 HBV pre-S2 trans-regulated protein 3
HGNC Previous namenucleolar protein 16 homolog (yeast)
 NOP16 nucleolar protein homolog (yeast)
LocusID (NCBI) 51491
Atlas_Id 50302
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 176383946 and ends at 176388598 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COX4I1 (16q24.1) / NOP16 (5q35.2)NOP16 (5q35.2) / GAPDHS (19q13.12)NOP16 (5q35.2) / NOP16 (5q35.2)
NOP16 (5q35.2) / SH3BGRL3 (1p36.11)SH3BGRL3 (1p36.11) / NOP16 (5q35.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)NOP16   26934
Cards
Entrez_Gene (NCBI)NOP16    NOP16 nucleolar protein
AliasesHSPC111; HSPC185
GeneCards (Weizmann)NOP16
Ensembl hg19 (Hinxton)ENSG00000048162 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000048162 [Gene_View]  ENSG00000048162 [Sequence]  chr5:176383946-176388598 [Contig_View]  NOP16 [Vega]
ICGC DataPortalENSG00000048162
TCGA cBioPortalNOP16
AceView (NCBI)NOP16
Genatlas (Paris)NOP16
SOURCE (Princeton)NOP16
Genetics Home Reference (NIH)NOP16
Genomic and cartography
GoldenPath hg38 (UCSC)NOP16  -     chr5:176383946-176388598 -  5q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOP16  -     5q35.2   [Description]    (hg19-Feb_2009)
GoldenPathNOP16 - 5q35.2 [CytoView hg19]  NOP16 - 5q35.2 [CytoView hg38]
ImmunoBaseENSG00000048162
genome Data Viewer NCBINOP16 [Mapview hg19]  
OMIM612861   
Gene and transcription
Genbank (Entrez)AF151019 AF151875 AF161460 AK300883 AK303281
RefSeq transcript (Entrez)NM_001256539 NM_001256540 NM_001291305 NM_001291306 NM_001291307 NM_001291308 NM_001317975 NM_016391
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOP16
Alternative Splicing GalleryENSG00000048162
Gene ExpressionNOP16 [ NCBI-GEO ]   NOP16 [ EBI - ARRAY_EXPRESS ]   NOP16 [ SEEK ]   NOP16 [ MEM ]
Gene Expression Viewer (FireBrowse)NOP16 [ Firebrowse - Broad ]
GenevisibleExpression of NOP16 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51491
GTEX Portal (Tissue expression)NOP16
Human Protein AtlasENSG00000048162-NOP16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3C1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3C1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3C1
Splice isoforms : SwissVarQ9Y3C1
PhosPhoSitePlusQ9Y3C1
Domains : Interpro (EBI)Ribosome_biogenesis_Nop16   
Domain families : Pfam (Sanger)Nop16 (PF09420)   
Domain families : Pfam (NCBI)pfam09420   
Conserved Domain (NCBI)NOP16
Blocks (Seattle)NOP16
SuperfamilyQ9Y3C1
Human Protein Atlas [tissue]ENSG00000048162-NOP16 [tissue]
Peptide AtlasQ9Y3C1
HPRD13694
IPIIPI00032849   IPI00747237   IPI00964448   IPI00964700   IPI00967210   IPI00968032   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3C1
IntAct (EBI)Q9Y3C1
BioGRIDNOP16
STRING (EMBL)NOP16
ZODIACNOP16
Ontologies - Pathways
QuickGOQ9Y3C1
Ontology : AmiGORNA binding  nucleoplasm  nucleolus  nucleolus  ribosomal large subunit biogenesis  intracellular membrane-bounded organelle  
Ontology : EGO-EBIRNA binding  nucleoplasm  nucleolus  nucleolus  ribosomal large subunit biogenesis  intracellular membrane-bounded organelle  
NDEx NetworkNOP16
Atlas of Cancer Signalling NetworkNOP16
Wikipedia pathwaysNOP16
Orthology - Evolution
OrthoDB51491
GeneTree (enSembl)ENSG00000048162
Phylogenetic Trees/Animal Genes : TreeFamNOP16
HOGENOMQ9Y3C1
Homologs : HomoloGeneNOP16
Homology/Alignments : Family Browser (UCSC)NOP16
Gene fusions - Rearrangements
Fusion : QuiverNOP16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOP16 [hg38]
dbVarNOP16
ClinVarNOP16
MonarchNOP16
1000_GenomesNOP16 
Exome Variant ServerNOP16
GNOMAD BrowserENSG00000048162
Varsome BrowserNOP16
Genomic Variants (DGV)NOP16 [DGVbeta]
DECIPHERNOP16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOP16 
Mutations
ICGC Data PortalNOP16 
TCGA Data PortalNOP16 
Broad Tumor PortalNOP16
OASIS PortalNOP16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOP16  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNOP16
Mutations and Diseases : HGMDNOP16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOP16
DgiDB (Drug Gene Interaction Database)NOP16
DoCM (Curated mutations)NOP16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOP16 (select a term)
intoGenNOP16
Cancer3DNOP16(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612861   
Orphanet
DisGeNETNOP16
MedgenNOP16
Genetic Testing Registry NOP16
NextProtQ9Y3C1 [Medical]
GENETestsNOP16
Target ValidationNOP16
Huge Navigator NOP16 [HugePedia]
ClinGenNOP16
Clinical trials, drugs, therapy
MyCancerGenomeNOP16
Protein Interactions : CTD
Pharm GKB GenePA164724025
PharosQ9Y3C1
Clinical trialNOP16
Miscellaneous
canSAR (ICR)NOP16 (select the gene name)
HarmonizomeNOP16
DataMed IndexNOP16
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNOP16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:29:11 CET 2021

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